UFO12044.5prime Sequence
1172 bp (1055 high quality bases) assembled on 2012-06-29
> UFO12044.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCTGAGCTGCGTCGCA
GTTTAAGTCGACTCTCGATGATCGTCTACAGAGCCACCCATTCCAGCGAA
CAGTCGTGGCGGGAGGAGCTTCTCAGGTACCGGCAGACACGTTTCAGTTC
GCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCGAGTGCAACGTTG
TGCAGGGAAATGTGGCCAAGAGACGGCGTCGCTATCTGCAGGACATCTTC
ACCACCCTGGTTGACGCCCAGTGGCGCTGGACGCTGCTCGTCTTCGCCGC
CAGCTTCGTGTTCTCGTGGGCCTTCTTTGGATTCATCTGGTGGATCATCG
CCTACGCACACAATGATCTGGAGTACACCAATCTCAAGAACCAGTCACCC
GATCTGGTGGCCAACATAACGCACACGGTCTGCGTAACACAGGTCTCCAA
TATGATGTCCGCCTTCCTGTACTCCGTGGAAACCCAGACGACGATAGGCT
ATGGTAATCGCTATGTGACGGAGGAGTGCCCGGAGGCGATATTCACGATG
TGCATCCAGTGCATCACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCAT
TGTGTTTGCCAAGTTGTCGCGTCCCAAGAAACGTGCCCAGACGCTGCTCT
TCTCGCGCAATGCTGTTATCTGCCACCGGGATGGAGTTCCATGCCTGATG
TTCCGTGTGGGAGACATGCGCAAGTCGCACATCATCGAGGCCCATGTGCG
GGCCCAGATCATCCGCAAGAAGGGTGACAAAGGAGGGCGAGGTGCTGCCC
TTCTACCAGCAGGAGTTGCACATCGGAGCCGATGGTGGAGAGGATCGGCT
AATGTTCATCTGGCCCACTACCATAGTGCACAAATTGATAGGAACAGTCA
CTGTACATGCTCCCCGCCTCGATATGCTAAAGGACGCTTCGAAGTGGTGG
TAATGCTGGAGGGCGTCATCGAGTCCACTGGCATGACACAACAGGCCAGA
AGCAGCTACTGCTTCGGGAGGTGCTGTGGGGCAATCGGTTCGTGAATGTG
GTGTCTCGCAGGGAGACCAGGCGATACGAGTGACTAACGCTATTCTAGAA
CCTCACGACTGTAACTCTCGCG
UFO12044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk1-RB | 2813 | CG44159-RB | 463..1536 | 82..1145 | 4860 | 97.8 | Plus |
| Irk1-RD | 2202 | CG44159-RD | 23..1005 | 173..1145 | 4405 | 97.6 | Plus |
| Irk1-RG | 2910 | CG44159-RG | 653..1633 | 175..1145 | 4395 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23183441..23184164 | 289..1009 | 3345 | 99 | Plus |
| 3R | 32079331 | 3R | 23182942..23183061 | 173..292 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23179079..23179176 | 82..179 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 23184222..23184319 | 1009..1105 | 305 | 89.8 | Plus |
Blast to na_te.dros performed 2014-11-28 17:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5832..5898 | 757..823 | 110 | 62.7 | Plus |
UFO12044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:53 Download gff for
UFO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir-RB | 463..1506 | 82..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:32 Download gff for
UFO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..1506 | 82..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:40 Download gff for
UFO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..1506 | 82..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:40 Download gff for
UFO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23179079..23179173 | 82..176 | 100 | -> | Plus |
| 3R | 23182946..23183060 | 177..291 | 100 | -> | Plus |
| 3R | 23183444..23184164 | 292..1009 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:32 Download gff for
UFO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19004801..19004895 | 82..176 | 100 | -> | Plus |
| arm_3R | 19008668..19008782 | 177..291 | 100 | -> | Plus |
| arm_3R | 19009166..19009886 | 292..1009 | 99 | -> | Plus |
