UFO12045.5prime Sequence
1156 bp (1052 high quality bases) assembled on 2012-06-29
> UFO12045.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCTAACCCTACTAATT
CGGCTGGCGGCGACGGCCATACCTGTTTGTGCTATTCTCTTTGTGGCCGG
CACGTTTCTGTTCAAGGTTTATATTAGCATACGATCCCGCTACGACGCCC
GTGTCAACTGCTGGTTCTGCAATGGCAATGTACGAGTTCCGTACCAGGAT
CGCAACAGTTGGACCTGCCCGTCATGCGAGCAATACAATGGATTCACCAA
GGACGGCGACTACAACCGGGATATTACGTCGCAGCGGGACTGCAGCCTTG
GCTCTCAGAAGAACAGCTCCAAAGGCAGCTCCAGCATCTGTGCCAACTCA
TATTATTCCGATGTCCTGACTGCTCAACCTCCTGCTCCCAAAAACGGCCT
GTGCGACCAGTGCAACGAGGCGCAGCGCCTGAAGGTCGAGAAGCTCTCTC
AATTCGAGCCCAAGAACGAGTCCCGATTCGATCAGGAACTAAAGGTTTAC
AGAGAACGACTGGAGAAGCAGTTTCGCCTGTGTAGCAGCTGCGAACGACA
TGTGAATAAAGTCCTGCACGAGAAGAAGAAAATGGTGTTGAGCTCCAAGT
TCTTGAACTATATCATCAAGGGAGCATCGTTGCTCAAGCAGCCGCACTTC
AACCGATTGGCCGCTGCCCAAAAGCAGTTTAAACTGCAGCGATACCGCAT
TCTGATGACCATCCTGACTGTAGTCAATATTTTGTGCCTGCTCTGCCGGC
TGCCGAATGCAACTTCCATTCAGTTTACGACTTACCTTGAAAATTCATTG
GGCTAACCTTGTTCTACGCCTACTCCCACGTGCTGGCCTTAATTCGAGTG
GTGACTTCGAGCGTAGCATTTTCCTGGAACAGCGCGAATGATAGCCAACT
TTTATTGTATGGCCGTACCTTTGGCAAGCTCTGCTGTATCGCTGCATAGC
AACAGCAGTGCAGCAAGCAAACTCGCATCTGTTTTATGGATCTACCCATA
TGCATGCTGACTTGGTTTCCTGCACACGAATATACGACGATGATTACCGA
TCACCAATGCTCTATTGTTAGATGTAGCCATGGATCGATCTGATCCTACC
ATGAAT
UFO12045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7744-RA | 2585 | CG7744-RA | 186..1247 | 83..1120 | 4625 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19453545..19453980 | 551..982 | 1980 | 99.1 | Plus |
| 2R | 25286936 | 2R | 19452845..19453214 | 183..552 | 1820 | 99.5 | Plus |
| 2R | 25286936 | 2R | 19452689..19452789 | 83..183 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:21 has no hits.
UFO12045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:53 Download gff for
UFO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 174..1247 | 72..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:35 Download gff for
UFO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 179..1252 | 72..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:42 Download gff for
UFO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7744-RA | 179..1252 | 72..1127 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:42 Download gff for
UFO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19452682..19452789 | 72..183 | 95 | -> | Plus |
| 2R | 19452846..19453214 | 184..552 | 99 | -> | Plus |
| 2R | 19453547..19454143 | 553..1127 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:35 Download gff for
UFO12045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15340187..15340294 | 72..183 | 95 | -> | Plus |
| arm_2R | 15340351..15340719 | 184..552 | 99 | -> | Plus |
| arm_2R | 15341052..15341648 | 553..1127 | 94 | | Plus |
