UFO12046.5prime Sequence
1185 bp (1094 high quality bases) assembled on 2012-06-29
> UFO12046.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGGGGAAAGT
GAAAGGCAGCATTATTGTCATTTACATGACCACTGGACTGCTGTACATAC
TGCTGAGCATAAAGTCATCCGCCAGCTACATGAGGCCAAAACGCCAGATG
TGGCCCGTGGATCATCCAGGGATCGTCCTCTATAGACAGCACCCGAACGC
CATGCGAAAGTTCTACTGGTACAACGCTAGGACCCCGATCCTGGTGGGCA
AAATGCGTCTAAAAAACTACATGCGCAACATGCACATGCTGCCCCGATAC
GTGCCCTCACCTGTCCAGTTCCACGAGGCCTATGCGAACTCGAAGAGGAG
CATCTTCAGGGACTTGAGCCAAGTGAATGGGTTCAAGAGCACACTCCTGC
CCATTGCTACTTCCACCGTTGACTTCGTTGCGGCCCCGCTCAACACGATT
GAGTACAGTTCCCCTCCGGTAAACGCACCTATTGGTTTCAGTTCAGCCCC
AGTCAACGCCTTCGTGCCCCTCACGACGGGAACCCTTCCGAGCGCAGAAC
GCCTCATTGGCGCTCCGAGTCTGTGGAACCACTCCGAAACCCACGCCTCC
AACGACGGCTGGAACAAGTGCCGCGAAAACTGCCTCCAGATTCCGTTCCA
GGAGTATGCCAAGGACCAATACAGCTCGCAGAGCAAGACCAGTGACCTGC
CGGTGACCACGACAACCACTTTGCCCTACTTCAACTACGTTGCGCACACC
TACTTCACCCTTGACGACGTGATTCTCCCCCATTCCGCATCGAAACTCGG
CAAATCTCCAGCACAAGACCAGCAATTTCGGCCCAGTCACAAATTCTCAC
AACGGAAGGCCCCAGAGCTTTTCACCGAGCGGTTTCAGCACACCACGCCG
CCTCCACTACACAACACGACCACTGAATTCACTTTTCCGGGAAAACCACT
GCTTTGGAAATGAGTACAGAATATAGCACCCGACAAGCTGGTTTAGCCCC
ACTACTTCCAGCACACACACCGAAGCTGCGGCTTCTGAGATCCCCGGAAT
TGAAACTCGCAACGCTCGACGTCTATTCCAGGGAAAGTACGAACGATCTA
ATAGCAGATAATCTGAAGCACAAACTCTCTCTAGC
UFO12046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13563-RB | 2123 | CG13563-RB | 166..1228 | 87..1130 | 4760 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24055951..24056655 | 396..1089 | 2895 | 97.3 | Plus |
| 2R | 25286936 | 2R | 24055687..24055890 | 195..398 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 24055572..24055634 | 135..197 | 315 | 100 | Plus |
| 2R | 25286936 | 2R | 24055471..24055520 | 87..136 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:47 has no hits.
UFO12046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:46 Download gff for
UFO12046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 156..1243 | 77..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:12 Download gff for
UFO12046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 156..1243 | 77..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:25 Download gff for
UFO12046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 156..1243 | 77..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:25 Download gff for
UFO12046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24055573..24055634 | 136..197 | 100 | -> | Plus |
| 2R | 24055690..24055889 | 198..397 | 100 | -> | Plus |
| 2R | 24055953..24056719 | 398..1142 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:12 Download gff for
UFO12046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19943096..19943157 | 136..197 | 100 | -> | Plus |
| arm_2R | 19943213..19943412 | 198..397 | 100 | -> | Plus |
| arm_2R | 19943476..19944242 | 398..1142 | 96 | | Plus |
