UFO12047.5prime Sequence
1034 bp (925 high quality bases) assembled on 2012-06-29
> UFO12047.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCAAACCCA
GAGCATAACACCCATTCCCAGCACACCGCCGCCTTCACGGCGGGCAAATC
GACCGCCCAGGATCAACATCCACAATCTGACCAGCGGATCGGCAATGAGC
CAGGCATCGATGCCACCCAGTGCCCAGCCACCCTATACGGCCCAAACGAA
CTTCACGGGCAATGGAACACAGGGACCCTACTGGCCACCAATGGCCAATC
CCTTCGGATACGGCAACTTTATGACCAAGGGCTACGAGGGCTTCCTCGAT
ATCACAAAGTCGGGCTTGAGCTTCGGCGAGAAGATGACCTTCGGCATGTA
CAAGTGGTCGCGCCGATGGTTCACCCACATCTTCCTCATCCTCATCCTGG
CACTATACAATATCGGCGGTGCCGTTGTATTCCGCACAATCGAAGTTCGT
CATGCAAATCAGGAAAAGCTGGTGGTGCAGGATCAGCAAAAGAGTTTCTT
CAATGAAATGCGTCAGGTTTCCGGCGATCTGAGCGGGTTGAGCAAACTTG
AATTCGAGGGTCAGGTGCTGCGCATCATGAACACCTATCCAACGGTGGTG
CAATCACTATTGCGATCCGGAATGGTAGACAATACGGATCCGTGGTCCTT
CTGGGATGCCATGGTCTATTCCGCTACGATTTACACGACCATAGGTTACG
GCCACATCACTCCAAAGACGGGCATGGGTCGATCCCTGACCATCGTCTAT
GCCATCATCGGCATCCCCATGTTCCTGATCGTGCTGGCCGATCTGGGCAA
GTTATTCACGCGCTGCGTCAAGTTCTGTGGGTGTATGTGCGACGATGTAC
TACACGCGCTCCTGCCGCGATACGAAGCAGCAGCAGATCGGAGCGCATGA
CAGCTTCATACGATTGTACGACTGCATCGCAGCGAGCATGTTCTTCAGCA
CTCTGCCAAGAAACGATGAGATCGCAGGCGGATG
UFO12047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34396-RC | 2175 | CG34396-RC | 278..1245 | 86..1034 | 4335 | 97.7 | Plus |
| CG34396-RD | 3484 | CG34396-RD | 2235..2554 | 734..1034 | 1065 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21092499..21092908 | 86..495 | 2050 | 100 | Plus |
| 2R | 25286936 | 2R | 21093755..21093914 | 587..746 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 21100213..21100414 | 743..939 | 795 | 97.5 | Plus |
| 2R | 25286936 | 2R | 21093592..21093685 | 494..587 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:50 has no hits.
UFO12047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:46 Download gff for
UFO12047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 258..1229 | 83..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:14 Download gff for
UFO12047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 274..1245 | 83..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:26 Download gff for
UFO12047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 274..1245 | 83..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:26 Download gff for
UFO12047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21093756..21093912 | 588..744 | 100 | -> | Plus |
| 2R | 21092495..21092908 | 83..495 | 99 | -> | Plus |
| 2R | 21093594..21093685 | 496..587 | 100 | -> | Plus |
| 2R | 21100215..21100523 | 745..1034 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:14 Download gff for
UFO12047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16980000..16980413 | 83..495 | 99 | -> | Plus |
| arm_2R | 16981099..16981190 | 496..587 | 100 | -> | Plus |
| arm_2R | 16981261..16981417 | 588..744 | 100 | -> | Plus |
| arm_2R | 16987720..16988028 | 745..1034 | 92 | | Plus |
