UFO12048.5prime Sequence
531 bp (437 high quality bases) assembled on 2012-06-29
> UFO12048.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGACGTCGATCCCGC
AGAAGAGGCGCCTCTAGACGAGGCACATACGTCCATATACGACGGCTATC
CGCCCGATTTCGGCTACTTCAACATGGCCCACGGAATGCTGGTGGAGATC
TCCGAGGAGATCCGGGCCAAGTTTCCCCACGAGCCGCGTCTACGTTTCTC
CCAGCTAAACAACCTTCACCTAGCGGCCCGCAGTGGTCAGATGTTGAGCT
TCGTCGAGATCTTGAATTCGGTTAGCTGCAGGGCGGTGCAGACCCACCTG
GTGAATACAAATTTCGATCAGCCGGATGGACAATCGCTAACACCCCCTGA
CCATGGCCGGCGATGATGGGCATGTGGAATTTCGTGAAGACTTCGCTGTC
CACTACCGACGTCGACTTGGGACCGAGAATGCAATGTCTCTACGACGGGG
ATGTGGTCCACGAGCACAGCCTTGGGGTGGG
UFO12048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RA | 2679 | CG9025-RA | 113..560 | 84..530 | 1870 | 96 | Plus |
| Fem-1-RB | 2486 | CG9025-RB | 196..367 | 360..530 | 490 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20666919..20667194 | 359..84 | 1380 | 100 | Minus |
| 2R | 25286936 | 2R | 20664918..20665068 | 512..360 | 315 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:53 has no hits.
UFO12048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:47 Download gff for
UFO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 48..490 | 81..524 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:15 Download gff for
UFO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 111..553 | 81..524 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:28 Download gff for
UFO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 111..553 | 81..524 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:28 Download gff for
UFO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20666919..20667195 | 84..359 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:15 Download gff for
UFO12048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16554424..16554700 | 84..359 | 99 | <- | Minus |
