UFO12049.5prime Sequence
1160 bp (1063 high quality bases) assembled on 2012-06-29
> UFO12049.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGCAACGATGGAT
ACGGACCATGCGAACCTAAATGACTTCAGGGATCGCGATCTGGCCACGCG
CATGCGCCGCTGCAATTACGAAAAATACAAATCCTTGGTGCGCATGCACC
TATCGTTTGAATTGGAGCTCAATACGGATGAGTTCGATCTCCCCTGTCAC
GAGATTGTCTACGAGGACAAGGGCAAGCTGAAAAAGTGGAACCGCCTGTC
TAAAAAACATCGTTTGGGACATGGAGCAGCTGCCACATCCTGTGCCGCCG
GCTCCGCCAGTAAATCCGTGGGTAATAGTCCCACAGAGACACTGCAACAG
CAGATTGATCCGGGATTCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCT
AATGCTGGAGAAGAATCTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTG
CGGTGTCACGACAAAACGAACTTCGGATGCACATCCAGCACGACAAACCA
CTGAATTTGGAACTTGCGGGCTTCTCCGCTCACGATTGCGCGACCGTTTT
CAAAGGTTTTCTATCCGAACTTCCAGAACCGCTGCTTACGGATGCCCACT
ATCCGGCGCATCTGCAGATAGCCCCACTCTGCCAGGCGCTCAATGGTCAG
ACGACTGCCACTGCTGAGCGTCAACAACATCTTCTCAACTCCGTGCAGCT
GCTACTTCTCCTCCTGCCCGAAGAACATCGTGAACTTCTTCAGCACATCA
TTGAGATGCTGCATGCTGTGGCCAAGCATGAGAAAAGCAACAAGATGAGC
GCCGATAACTTGGCCACTCTCTTCACACCGCACCTAATTTGCCCAAGGCA
ACTGCCACCCGAGGTCCTGCACTACCAGGCCAAGAAAATGTCCAGCATCG
TGACCTATATGATCGTCCGTGACTGGACATCTTCGAGGTGCCTGGAAAGC
TGTCTACGACATCCGGGCGTACTTTCTCGAGCGCAAAGAAAGAAACCATG
TCCGCCGGAACAAACGCTGACGAGTCATCTCGACGTCTCGACGTCACCCG
TGTACCTTTGTAGACGGCCGCCACTGCACGCACATACGAACATACGGACC
GGACTGGCAC
UFO12049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 334..1431 | 82..1158 | 4880 | 97.5 | Plus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 530..1627 | 82..1158 | 4880 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17589248..17589854 | 1068..465 | 2780 | 98.4 | Minus |
| 2R | 25286936 | 2R | 17589908..17590139 | 464..233 | 1145 | 99.6 | Minus |
| 2R | 25286936 | 2R | 17590204..17590355 | 233..82 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:36 has no hits.
UFO12049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:55 Download gff for
UFO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RB | 521..1589 | 75..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:39 Download gff for
UFO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..1591 | 75..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:47 Download gff for
UFO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..1591 | 75..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:47 Download gff for
UFO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17589908..17590140 | 232..464 | 99 | <- | Minus |
| 2R | 17590206..17590362 | 75..231 | 98 | | Minus |
| 2R | 17589176..17589854 | 465..1131 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:39 Download gff for
UFO12049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13476681..13477359 | 465..1131 | 97 | <- | Minus |
| arm_2R | 13477413..13477645 | 232..464 | 99 | <- | Minus |
| arm_2R | 13477711..13477867 | 75..231 | 98 | | Minus |
