UFO12050.5prime Sequence
1143 bp (1038 high quality bases) assembled on 2012-06-29
> UFO12050.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCTGGCTCTG
AATAAACCATCATCCTGCGTGGACTGCTGCAAGGACTGCACTCTGCTGCC
CTGCTGTTCTGCCTCCGCCTGCTGCGACGCTAGCTGCGACGCCGCCTGCG
GGTTAATACCGCCCGATCCAGTCAGATATGAGTACCAGGAGCCCGAGGAG
AACTTCATATCCATTGATGATGTGAAAATCAAGAGTTTCCTGTGGCAAAT
CGGCCAGCAGCAGAGGGAAAAGGAGTTGGAAATCAAAAGGATCATGGAAC
AAGAGAAAAGGGAGAAAAGAGAGAAGGAAAGGCGGGAGGCCGAAAAGCGA
AGAGATCAAGAGGTAATCGAATTGGACGAGGAGGAGGCTCAATCTCCTCG
GGGTCTCATAATCAGCGCAGCCAGGAGTCTAGCCCATTGGAATTCATCCA
TTAGGAGGGTAACACCAGATATCGAACTGATTCCCAGACGGGTGCACAGG
GTTGTCGCAGAAATCGAACTGAGTGATAGTGATCACGATGAAGATAGTGA
AGTAGATGAGGATGTAAGTCTTCCATCAAACGCTGTAAGCTGCGTCCTGA
ATGAGCAGAGACAGGATGGAAGCCAGAATCCACAGGAACTGGTGATCATC
GTGCCCTCCGACCAGGAGGACGAACAGAAGACAGACAATGTCATCAAGAG
GAAATCTTCTGGGTCGAGGAGATTAGTAAAGAGGCGTCCAGGTGCCAACA
GAAAGGGGAAGGCATATGTACGAATGTCCTGACTGCGGGAAGAAAGTGCA
ATCTAATTACAATCTAAGACGTCATATGATGATCCACACAGGTGAAAGAC
CATTCCTTGTGATCTGTGCGAGCGACGTTTTCGGGAATTCAGCGATCTTA
AAAGCATCGTCGAGGCACTCACACGATCACAATTCATTTGCATGATCTGT
CACTTGGGGAGCACCTTTGGAGCAGACTCTACCAGGTGTGCGATTGTGAA
GGCAGATCTTATGTAAACTCACAGAGGGAACTGGGCGAAAACACGAGAAC
ATTCCGAATGAATGAGGTTGATGACGAAATAGATCGGTCTGAA
UFO12050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4496-RC | 2623 | CG4496-RC | 532..1547 | 86..1091 | 4685 | 98.2 | Plus |
| CG4496-RB | 2219 | CG4496-RB | 128..1143 | 86..1091 | 4685 | 98.2 | Plus |
| CG4496-RA | 2238 | CG4496-RA | 128..1143 | 86..1091 | 4685 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7186830..7187636 | 893..86 | 3990 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7186612..7186769 | 1042..889 | 480 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:40 has no hits.
UFO12050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:56 Download gff for
UFO12050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1196 | 86..1137 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:41 Download gff for
UFO12050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1196 | 86..1137 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:48 Download gff for
UFO12050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4496-RA | 128..1196 | 86..1137 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:48 Download gff for
UFO12050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7186832..7187636 | 86..891 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:41 Download gff for
UFO12050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7186832..7187636 | 86..891 | 99 | == | Minus |
