UFO12051.5prime Sequence
1168 bp (1067 high quality bases) assembled on 2012-06-29
> UFO12051.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGTCACGGATCGTTTTT
ATATGTCTCGCAGCCATCTTAACAGATGCACTCACCTGGGCCCAGGTGAA
TGTGGAACCCAACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGC
TCTGTCGGTACGGCAGATCCATCAACTACTGCCGCATTGAGATTCCCGGC
GAGCAGAAGGTACTCAACCTGTCGCCGGAGTGGAGCAAGACACCCGGATT
CACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCGTGAGCATCG
AGAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTC
GAGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCC
CCAGCAGCCCATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACT
TCAACGAGGGCACTGAATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGT
CCGCCGGCTAACATCTCGTGGTACATCGACAACATGCCGGCCAACAAGCG
CACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAACGTGGAGCTAT
CGACCTCCGTGCAGGAAATCCAGTGGCACCTGTCGCCCGAGGACAGCAAC
CGGAAACTGGTCTGCCGCTCCCACCACCAAACCGATCGCGAGAGTGTGCC
GCCCCAGGAAGCTGCCTACATCATCAACGTGCGCTATGCTCCCGTCCATC
AGCCAGATGCCGCCGTGTATGGACTCTACCTCGAGCACACTGCCATTGTG
AACATAACCATCCGCGCCAGTCCGCAGCCCAAGATCGAGTGGACCATCGA
TGGAGCTATTGTGGGGGCAGGACGCACCGATGGACGCTACTCGGCGTATG
AGCCGCAGTATCTGGGCACGATGAGTACAACGTTACACTGGCCATTGCCG
GACTGACCCTGAAGAAACCACCAAATCTACATCTGAGGCCAGCAATGACT
GGGACTGACGGACTACCAGGGGCGAATCAGTTCGTCAGCCAACGCAGCAG
CAGGCTCGATGTGGGCGCATTCGGTTGCCATTGGTCCGCGGTGCCGATTG
TCCCTGTCCGTTACTGGA
UFO12051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-RF | 2422 | CG5803-RF | 586..1646 | 82..1133 | 4880 | 98 | Plus |
| Fas3-RG | 3265 | CG5803-RG | 586..1646 | 82..1133 | 4880 | 98 | Plus |
| Fas3-RE | 2567 | CG5803-RE | 586..1646 | 82..1133 | 4880 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18383839..18384180 | 444..785 | 1710 | 100 | Plus |
| 2L | 23513712 | 2L | 18383399..18383719 | 123..443 | 1605 | 100 | Plus |
| 2L | 23513712 | 2L | 18384459..18384765 | 786..1086 | 1160 | 96.4 | Plus |
| 2L | 23513712 | 2L | 18320687..18320730 | 82..125 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:43 has no hits.
UFO12051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:57 Download gff for
UFO12051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RC | 587..1647 | 82..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:43 Download gff for
UFO12051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RD | 586..1646 | 82..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:49 Download gff for
UFO12051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RE | 586..1646 | 82..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:49 Download gff for
UFO12051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18384459..18384815 | 786..1133 | 94 | | Plus |
| 2L | 18320687..18320730 | 82..125 | 100 | -> | Plus |
| 2L | 18383402..18383719 | 126..443 | 100 | -> | Plus |
| 2L | 18383839..18384180 | 444..785 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:43 Download gff for
UFO12051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18320687..18320730 | 82..125 | 100 | -> | Plus |
| arm_2L | 18383402..18383719 | 126..443 | 100 | -> | Plus |
| arm_2L | 18383839..18384180 | 444..785 | 100 | -> | Plus |
| arm_2L | 18384459..18384815 | 786..1133 | 94 | | Plus |
