UFO12052.5prime Sequence
1137 bp (1058 high quality bases) assembled on 2012-06-29
> UFO12052.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCAAAACTGCAGGC
GCTGCATCAGCCTAACGGGCCTTTTGCGGATGACACTCTACCTGCGTCCG
TCCTTTTCAATTGATTTGTCCCTGCGCCGACTGCATCGTGCGGCCTTTTT
ATTTTCTCGAAAAAAACCGGAGACGAACTTGTCCACGTTGTTCAAGCCAG
TACAGGTGCACGCTTATGTGGATTCAGAGGACGTAGGTTCCGAGCTGTCG
GGCAAACTGGAAAAGGCTGAGCTGCTGAAGATTCTTAATAAGTTCACCCA
ACGTCGCGAAATCAAGTCACTATGCAACGAAAACGGACTGGACGACTACC
TACAGCAACAGGCCTTTGGCTCATTCCGAAGATTTTGCATCGAGGCAGAA
AACCTTCCAGTAGATCTGCACATAACCTTTAGCGATATAACACAGGGAGC
GGGTCATATCGATGACATCTTCCCGTACTTCCTACGACACGCAAAGACAG
TATTCCCGCACCTGGACTGCATGGACGACCTGAAAAAGATTTCCGACCTG
AGGCAGCCTGCCAACTGGTATAGCAACGCTCGCGCCATCACCCGAAAGAT
TGTTTTTCATGCCGGACCCACAAACTCCGGTAAGACTTACCATGCCATGG
AGAGATACCTGAGTGCGAAGACTGGGGTCTATTGCGGGCCACTAAAGCTT
CTAGCCACTGAGGTGTACAACAAGGCCAATGAACGTGGCACTCCCTGCGA
TCTGGTCACAGGCGAGGAGCGCAAATTCGGCATCAGCGAAAGTTTGCCAG
CCAATCACGTCGCGTGCACTGTGGAAATGACCTCGGTGATACTCCATATG
AGTGGCTGTAATCGATGAAATACACAGATCCGCGACCCCCAGCGGGGATG
GGCTTGGACGCGTGCCTTCCTTGGACTGATCGCGGATGAGTGCATGTTTG
TGGTGAGCCAGCGCATGACCTCCTGCAAAAATTTGCGAACCACTGGCGAA
CTGTGAGTACGCTGTACGATCGCTACGGACTGACTGTCGAAATACCGCTT
TAGATCATGCACATTAGGTCTGCGACTGCATGTGGCC
UFO12052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9791-RC | 2530 | CG9791-RC | 110..1152 | 84..1108 | 4775 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4312029..4312524 | 394..889 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 4311664..4311974 | 84..394 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 4312602..4312757 | 902..1050 | 465 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:45 has no hits.
UFO12052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:57 Download gff for
UFO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 129..1180 | 84..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:46 Download gff for
UFO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 110..1161 | 84..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:50 Download gff for
UFO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9791-RC | 110..1161 | 84..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:50 Download gff for
UFO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4311664..4311974 | 84..394 | 100 | -> | Plus |
| 3R | 4312030..4312533 | 395..897 | 99 | -> | Plus |
| 3R | 4312597..4312833 | 898..1116 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:46 Download gff for
UFO12052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 137386..137696 | 84..394 | 100 | -> | Plus |
| arm_3R | 137752..138255 | 395..897 | 99 | -> | Plus |
| arm_3R | 138319..138555 | 898..1116 | 91 | | Plus |
