UFO12053.5prime Sequence
1154 bp (1041 high quality bases) assembled on 2012-06-29
> UFO12053.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCAGCTAACAACAA
CAATAGCATCATACACAACCTGGGCGCGGGGACGGAGGGCTTGCTCTCCT
CCGTGATTGCGTCGACGGGGACTCCTGGCATGGGATCCTCGCCCGTGCCC
TCCAGAGCATCTTCATCGTCCGCCTCCTCCGCCGCACAGAGTGCTTGGGA
TCAATTGACGGCGAGTGCCTCCAACAACATGTCACCTTCACCCACGGCAG
GAGCGCCCACGGTCACGGGACCCATTCTACCAGACAATCTGGGCGTAGGA
GCGGGCAGTTCACCGGTGGCCAGTTGCTCCTCCCCCTCGACGCCCACGAA
AACACATGCGCCCTCACCGCTGGAGAGCATGGGCCATACACCGCAAGGTC
CGCCAACCTTGGGACCCGGTGGATATGGCGAGGAGCTAACCGCCGAGCTG
GTAAACCAGGGATGGCGGAAATTCTGGTCCAAGAGGGAAAACCGCCCATA
CTATTGGAACAAAGTCACCGGCGAATCGCTGTGGGAGATGCCCGGCACCA
GACCCTTTGATCCGCTCACCGACCCTTTGGGCATCTGCCATGCGGGCGGT
CCGACGCCGATCATCCCCAATATGCACCAGCAGCAACAGCACCAGCATCA
TCACCTGAAGCGGCGGCCGTCGGATGACATGCACATCCATCCCAATCAGC
ATCATATGGGCGGCGGACCTCCAATGAAGAAGTTTGTTCTGGCCGGTCCC
TGGGACCTGGAGGTGTGCACCAATGCCGTTATTGTAGAGCGACCGCCGAC
ACTTCTGCCGCAACCGCATCCTGAGGTAGAGGCTTTACGGGCAGCCTTCA
CCATGAAGCTGCTGAAAACCTACGAGATCTGTGCATGCGGAGAGAAAATA
TAAAGGCACCCAGAGATTCTTTCAACCGCTGGCTGATGGAACGCAAGTGA
TAGACACGGCTGCGACCGCTGCTGCCCAGCAGTTGCATGCCGAATCTCAG
CTCCATGTTACGCGAGATCATTGTTCGAATAACTATTCAAGATAGTGAGC
AAGTTCCAAGGGATGCAGAGCAGCTTTCCGCTACGCAAGGCCGCTTAAGC
CAAT
UFO12053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11399-RB | 4254 | CG11399-RB | 183..1260 | 83..1145 | 4840 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20783613..20784608 | 1071..83 | 4610 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 17:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6888 | 675..754 | 130 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2364 | 675..717 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6839 | 675..717 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2673 | 660..711 | 121 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6855 | 675..754 | 121 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 660..719 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6763 | 667..719 | 116 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1098..1148 | 660..711 | 113 | 71.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3371 | 675..756 | 112 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1586 | 660..707 | 111 | 72.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1154 | 675..705 | 110 | 83.9 | Plus |
UFO12053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:58 Download gff for
UFO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 186..1235 | 75..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:47 Download gff for
UFO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 177..1226 | 75..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:51 Download gff for
UFO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 177..1226 | 75..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:51 Download gff for
UFO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20783565..20784617 | 71..1116 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:47 Download gff for
UFO12053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20776665..20777717 | 71..1116 | 97 | <- | Minus |
