UFO12054.5prime Sequence
1177 bp (1038 high quality bases) assembled on 2012-06-29
> UFO12054.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGCTGACCTGGACGCTGT
GGTGTGGACTGCTGTTCCTGCTCTGGATCTACTTTCTGTGGAGCAGGCGC
AGATTTTATCTGCTAACGCTAAAGATACCGGGACCACTTGGATATCCCAT
TTTGGGCATGGCTCACTGGCTGATGCGCAGGGAAGATATCCTCAACGCAT
TCGGCTGCTTTCTCGACAAGCACGGTCCGACAATTTTCTCCTGGCTGGGG
CCCATTCCCTTTATGATTGTGAGTGATCCCCAAGTGGTGCAGGATATCTT
CACATCTCCCCACTGCGTCAACAAGGGCATTATTTACAAGGCAGTGGACG
ATGGCGCCGGAGTTGGATTATTCAGCCTGAAGGATCCCCGCTGGAGCATC
CATCGGAAGCTGCTGAATCCCGCCTTCGGCCACAAGGTGCTACTCAGCTT
CCTGCCCATTTTCAACCGGGAGACGGCCCTTCTGCTCGATCAACTCGAAC
CACTGCAGGATGACGGCGAGAAGGATCTCATTCCACTGCTGCAGAGCTTC
ACCCTGGGAATTGCCACCCAAACCACCATGGGCAGCGATGTAAAGGATGA
AGAGAGCTTCAGGAGCAATTCCTTGCTGGGGCGATACCAATGCATCCTGG
AAACCATGACAGATATGTGCTTCTCTCCGTGGCTCAATAGCCGATTTTGC
CGGCAGCTGGCTGGAAAGGAATCGCACTACTACCAGGCCAAAACTGAGAT
TCGTCAGTTTATTCGGAAGATAATTGAGAGAAAGTTGGCCGAGGACGAAA
TGGGAGCACTACCTTCCATCCAGTCCAATGATAAAAACCTATTTCTAAAT
CTGGTCACGGATTTGATGAGACGAGGAGTGTTTACCCTGAAGATGTTGAG
ATGAGTCGAATATCATCGTTTTGGAGCTTTGAGACCACGGCTAATGCATG
TACTACACCCTGATGTTGCTGCGATGTTTCGAATACCAGAGAGGCTTTGA
GAATAAGACGATATCCCAACCAGAGACTTGATGTTCTACGCGACCCAGCA
ATGTGTACTGACTGATCCTCACGATCATGAAAGTAAACCCCTGTTCTGTC
GATCGACACGTTCAGATCGACCGCAAT
UFO12054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a4-RA | 1651 | CG6802-RA | 70..1175 | 81..1151 | 4705 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12680889..12681088 | 433..234 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 12680650..12680836 | 619..433 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 12679982..12680190 | 1021..818 | 795 | 97.6 | Minus |
| 3R | 32079331 | 3R | 12681152..12681306 | 235..81 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 12680248..12680375 | 819..692 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 12680418..12680490 | 692..620 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:52 has no hits.
UFO12054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:59 Download gff for
UFO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1042 | 81..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:49 Download gff for
UFO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1042 | 81..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:53 Download gff for
UFO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1042 | 81..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:53 Download gff for
UFO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12679955..12680188 | 820..1044 | 96 | <- | Minus |
| 3R | 12680248..12680374 | 693..819 | 100 | <- | Minus |
| 3R | 12680418..12680490 | 620..692 | 100 | <- | Minus |
| 3R | 12680650..12680835 | 434..619 | 100 | <- | Minus |
| 3R | 12680889..12681086 | 236..433 | 100 | <- | Minus |
| 3R | 12681152..12681306 | 81..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:49 Download gff for
UFO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8506372..8506557 | 434..619 | 100 | <- | Minus |
| arm_3R | 8506611..8506808 | 236..433 | 100 | <- | Minus |
| arm_3R | 8506874..8507028 | 81..235 | 100 | | Minus |
| arm_3R | 8505677..8505910 | 820..1044 | 96 | <- | Minus |
| arm_3R | 8505970..8506096 | 693..819 | 100 | <- | Minus |
| arm_3R | 8506140..8506212 | 620..692 | 100 | <- | Minus |
