UFO12055.5prime Sequence
1156 bp (1052 high quality bases) assembled on 2012-06-29
> UFO12055.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGACGACCCACCAGTT
GCTAAACAAGAATGTTCGCACCATGCCCTCCTGGGTGATGGAGGCAAATG
ACCGCATTGGGCCCAAACCGCCACCCACGCCACCAAACGGTGTGGCTGGT
GGTCTTCCCAAGGCGCCTGCTCTGCCGCCCAAGGCGAAGAGCACTCCCGA
GCCGGACTACGAGATCATCGAATTCTCCAGCCAGCAGTACTCCAACGAAC
CGATGAAGACCACAGTGATCAGAACCAAGACACCAGATAACAAACTAAAG
TGCACCTTGTGCGGTTCCCAGAATCCCTGGGTAACCTGTGCCGAGTGCGC
CGGCCAAATCTTTTGCGCCTCCTGCGACGACATGTTCCACAAGCATCCCA
AACGTAAGCAGCACATGAGAAAGGCTGTGGAGCAGGGCACACCGCCGATT
CCGCCAAAGGCACAGGCCGGTGGTGGGGCACCACCACCAGTGGCACCTCC
ACGACGCAGCAAACGAGGCCTTTTGACACCGTTTCTGGGCCGCAAGGATC
AGATGCTGCCGCCGCCCTCGCCCACGCCCTCGCACAAGTCGCTGGGCGGC
TGGCGGGGATCGCTCGGTGGCGGGGCCACGCCCCCAGTGCCACCAATTGC
CACCAGCTCTGCCAACCAGATGAACAACCGACCACTGCCCGATCCACCGC
GCAGCGAGGGCGGGGGATCTTCCAGATCGGGCACCCCCAAGTCCGTGTTC
GACACCATCCAGCGACCGCCGTCGGTGCAGCTGGAGAAGATCAAGAGCAA
GGCCAGCGCCACGCTGGACCGCATGGCCATTCTGCAGCAGCGGTACCGCC
AACAGAAGCTCGCCAGGATCTGAGCGCCAACAGCGAACAGGCGGCCGGCG
CCCAGCGGCGACAGATGAAGCACATCGTGTTCAATCTCAACTCGAATCAC
GTCGACCACTGTTCGAGGCCCAAAACGAGGTGCTGCTCGCCAATCAGCGC
ATCAGCAAGCCCATCCCTGCGCAGCTAACTGGCCTGAATGTCCACAAATT
CAGCAGCATCCTGCTGGTACAAGCATTCCGTACAAGACTACCTCAGCACC
AGACAT
UFO12055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11321-RJ | 8906 | CG11321-RJ | 149..1228 | 84..1152 | 4825 | 97.4 | Plus |
CG11321-RI | 9009 | CG11321-RI | 129..1208 | 84..1152 | 4825 | 97.4 | Plus |
CG11321-RF | 2882 | CG11321-RF | 263..1342 | 84..1152 | 4825 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6769397..6769739 | 941..600 | 1665 | 99.7 | Minus |
2L | 23513712 | 2L | 6770335..6770534 | 336..137 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 6770133..6770273 | 474..334 | 705 | 100 | Minus |
2L | 23513712 | 2L | 6769953..6770083 | 602..472 | 655 | 100 | Minus |
2L | 23513712 | 2L | 6768852..6768972 | 1053..937 | 315 | 93.4 | Minus |
2L | 23513712 | 2L | 6770591..6770644 | 137..84 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:55 has no hits.
UFO12055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:59 Download gff for
UFO12055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11321-RC | 130..1212 | 84..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:52 Download gff for
UFO12055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11321-RF | 263..1345 | 84..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:54 Download gff for
UFO12055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11321-RF | 263..1345 | 84..1156 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:54 Download gff for
UFO12055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6768846..6768968 | 941..1058 | 92 | <- | Minus |
2L | 6769398..6769736 | 603..940 | 99 | <- | Minus |
2L | 6769953..6770081 | 474..602 | 100 | <- | Minus |
2L | 6770134..6770270 | 337..473 | 100 | <- | Minus |
2L | 6770335..6770533 | 138..336 | 100 | <- | Minus |
2L | 6770591..6770644 | 84..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:52 Download gff for
UFO12055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6768846..6768968 | 941..1058 | 92 | <- | Minus |
arm_2L | 6769398..6769736 | 603..940 | 99 | <- | Minus |
arm_2L | 6769953..6770081 | 474..602 | 100 | <- | Minus |
arm_2L | 6770134..6770270 | 337..473 | 100 | <- | Minus |
arm_2L | 6770335..6770533 | 138..336 | 100 | <- | Minus |
arm_2L | 6770591..6770644 | 84..137 | 100 | | Minus |