Clone UFO12055 Report

Search the DGRC for UFO12055

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:120
Well:55
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11321-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12055.5prime Sequence

1156 bp (1052 high quality bases) assembled on 2012-06-29

> UFO12055.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGACGACCCACCAGTT
GCTAAACAAGAATGTTCGCACCATGCCCTCCTGGGTGATGGAGGCAAATG
ACCGCATTGGGCCCAAACCGCCACCCACGCCACCAAACGGTGTGGCTGGT
GGTCTTCCCAAGGCGCCTGCTCTGCCGCCCAAGGCGAAGAGCACTCCCGA
GCCGGACTACGAGATCATCGAATTCTCCAGCCAGCAGTACTCCAACGAAC
CGATGAAGACCACAGTGATCAGAACCAAGACACCAGATAACAAACTAAAG
TGCACCTTGTGCGGTTCCCAGAATCCCTGGGTAACCTGTGCCGAGTGCGC
CGGCCAAATCTTTTGCGCCTCCTGCGACGACATGTTCCACAAGCATCCCA
AACGTAAGCAGCACATGAGAAAGGCTGTGGAGCAGGGCACACCGCCGATT
CCGCCAAAGGCACAGGCCGGTGGTGGGGCACCACCACCAGTGGCACCTCC
ACGACGCAGCAAACGAGGCCTTTTGACACCGTTTCTGGGCCGCAAGGATC
AGATGCTGCCGCCGCCCTCGCCCACGCCCTCGCACAAGTCGCTGGGCGGC
TGGCGGGGATCGCTCGGTGGCGGGGCCACGCCCCCAGTGCCACCAATTGC
CACCAGCTCTGCCAACCAGATGAACAACCGACCACTGCCCGATCCACCGC
GCAGCGAGGGCGGGGGATCTTCCAGATCGGGCACCCCCAAGTCCGTGTTC
GACACCATCCAGCGACCGCCGTCGGTGCAGCTGGAGAAGATCAAGAGCAA
GGCCAGCGCCACGCTGGACCGCATGGCCATTCTGCAGCAGCGGTACCGCC
AACAGAAGCTCGCCAGGATCTGAGCGCCAACAGCGAACAGGCGGCCGGCG
CCCAGCGGCGACAGATGAAGCACATCGTGTTCAATCTCAACTCGAATCAC
GTCGACCACTGTTCGAGGCCCAAAACGAGGTGCTGCTCGCCAATCAGCGC
ATCAGCAAGCCCATCCCTGCGCAGCTAACTGGCCTGAATGTCCACAAATT
CAGCAGCATCCTGCTGGTACAAGCATTCCGTACAAGACTACCTCAGCACC
AGACAT

UFO12055.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11321-RJ 8906 CG11321-RJ 149..1228 84..1152 4825 97.4 Plus
CG11321-RI 9009 CG11321-RI 129..1208 84..1152 4825 97.4 Plus
CG11321-RF 2882 CG11321-RF 263..1342 84..1152 4825 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6769397..6769739 941..600 1665 99.7 Minus
2L 23513712 2L 6770335..6770534 336..137 1000 100 Minus
2L 23513712 2L 6770133..6770273 474..334 705 100 Minus
2L 23513712 2L 6769953..6770083 602..472 655 100 Minus
2L 23513712 2L 6768852..6768972 1053..937 315 93.4 Minus
2L 23513712 2L 6770591..6770644 137..84 270 100 Minus
Blast to na_te.dros performed on 2014-11-28 17:53:55 has no hits.

UFO12055.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:59 Download gff for UFO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RC 130..1212 84..1156 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:52 Download gff for UFO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RF 263..1345 84..1156 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:54 Download gff for UFO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RF 263..1345 84..1156 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:54 Download gff for UFO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6768846..6768968 941..1058 92 <- Minus
2L 6769398..6769736 603..940 99 <- Minus
2L 6769953..6770081 474..602 100 <- Minus
2L 6770134..6770270 337..473 100 <- Minus
2L 6770335..6770533 138..336 100 <- Minus
2L 6770591..6770644 84..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:52 Download gff for UFO12055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6768846..6768968 941..1058 92 <- Minus
arm_2L 6769398..6769736 603..940 99 <- Minus
arm_2L 6769953..6770081 474..602 100 <- Minus
arm_2L 6770134..6770270 337..473 100 <- Minus
arm_2L 6770335..6770533 138..336 100 <- Minus
arm_2L 6770591..6770644 84..137 100   Minus