UFO12056.5prime Sequence
1167 bp (1017 high quality bases) assembled on 2012-06-29
> UFO12056.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGGGCAGTCCATACTACC
GCGACATGGATGAGCCAACCAGTCCGGCCGGAGCGGGTCACCATCGCAGC
CGGAGCGCCAGCAGACCACCGATGGCCCATGCCATGGACTATCCAAGAAC
CCGCTACCAATCGCTGGATCGCGGTGGACTCGTGGATCCCCATGATCGCG
AGTTCATACCCATTCGGGAGCCCCGCGACCGCTCCAGGGACAGATCCCTC
GAACGGGGCCTGTACCTAGAGGACGAGCTCTATGGCAGATCAGCGCGTCA
GAGCCCCAGCGCCATGGGTGGATACAATACGGGCATGGGCCCCACATCGG
ATCGAGCTTATTTGGGCGACCTGCAGCATCAGAACACCGACCTGCAGCGG
GAGCTGGGGAACCTGAAGCGGGAACTGGAGCTGACTAACCAGAAGCTGGG
CAGCTCGATGCACAGCATCAAGACCTTCTGGTCGCCGGAGCTCAAGAAGG
AGCGAGCACTGCGCAAGGAGGAGAGCGCCAAGTACAGTCTGATCAACGAT
CAGTTGAAGCTGCTCAGCACGGAGAACCAGAAACAAGCTATGCTGGTGCG
CCAGCTGGAGGAGGAGCTGCGCCTGCGAATGCGACAGCCCAACCTGGAGA
TGCAGCAGCAGATGGAGGCGATCTACGCGGAGAACGACCACTTGCAGCGG
GAGATCAGCATCCTGCGCGAGACGATCAAGGATCTAGAGTGCCGGGTGGA
GACCCAGAAGCAAACACTGATTGCCCGCGACGAGAGTATCAAGAAGCTGC
TGGAAATGCTGCAGCCAAGGGAATGGGCAAAGAGGAGAGCGTCAGATGTT
CCAGCAGATGCAGCCATGGCCCAGAAGCAGATGTACAATACTACACGGGC
GCCAGCGGAGCAGTCCTCCATTGCCGGACATTATTGCCAGTACTACGGGC
CGGGAGGTCTGGGTCCGGCCCCTGTCCTACGTCGGCCATGGTACGCCGCC
CGGTACGATCTGTACGCCATCGACCTCGACGCAGCTGGGTGATACGAACT
GATAGATCCGCAATCTACGACGGCCAGCAACCTCGCCATTCGGAGAGGGC
TTAGATTGCGCTGCCCT
UFO12056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brp-RJ | 11909 | CG42344-RJ | 940..2032 | 82..1150 | 4755 | 97 | Plus |
| brp-RM | 9436 | CG42344-RM | 549..1400 | 82..930 | 4185 | 99.6 | Plus |
| brp-RH | 5562 | CG42344-RH | 39..890 | 82..930 | 4185 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9510221..9510654 | 197..630 | 2170 | 100 | Plus |
| 2R | 25286936 | 2R | 9510827..9511079 | 626..877 | 1215 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9509890..9510005 | 82..197 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 9522935..9523043 | 928..1031 | 315 | 94.5 | Plus |
| 2R | 25286936 | 2R | 9511143..9511199 | 876..930 | 185 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:58 has no hits.
UFO12056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:00 Download gff for
UFO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RF | 1161..2200 | 82..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:54 Download gff for
UFO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 933..1979 | 70..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:55 Download gff for
UFO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 933..1979 | 70..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:55 Download gff for
UFO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9509879..9510004 | 66..196 | 96 | -> | Plus |
| 2R | 9510221..9510654 | 197..630 | 100 | -> | Plus |
| 2R | 9510832..9511078 | 631..876 | 99 | -> | Plus |
| 2R | 9511144..9511199 | 877..930 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:54 Download gff for
UFO12056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5398649..5398704 | 877..930 | 96 | -> | Plus |
| arm_2R | 5397726..5398159 | 197..630 | 100 | -> | Plus |
| arm_2R | 5397384..5397509 | 66..196 | 96 | -> | Plus |
| arm_2R | 5398337..5398583 | 631..876 | 99 | -> | Plus |
