UFO12057.5prime Sequence
1131 bp (1038 high quality bases) assembled on 2012-06-29
> UFO12057.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGAACAGCTTAGTGCGA
CGCAGCGCCCAGCAGCTGAGCCTCTGGCGTACATATTGCATAAAGCACAA
TGCTTCAGAGGCGGCTTCTCCCGGACGGAACGCAGGCAGGCCCAACTACG
AGGAGTTCATTGGCCGTCATCAGCGACAGGCCCAGTGCAGCATTGTGGTC
CAGGTGAGCTCCGAAAAGTCGTATGAGGAGTTGTATAACTACTGCAGCAG
CTTCGGCTCGATCATGGGTGCCCACCACTACTGCGTGCGGCAGGACGAGA
CCCTGCACTACATCCTGCTGGAGTACGCCACGTCGGACGAGGCGGCGGCT
GCCATCGGAGCGGGCGTTACCAATGGCGAGCTGAGCGGCGTGCCCGTGCG
ATCTCCCTTTCTGTGGTTCCGGGCAGCGGGAGGAGGCAGACGGAGCCCCA
AGCTAGTTGCCAATACAGCGCCCGCACTGCTATCCTTGGACGGCACCCGG
CAGGTGGATCAGCGCCACCTACTGGGGCTCTTACGTGGTGCAGCGGACAT
CGAAGAGCAGGTGCAGCAGCTGTACGAGCACACGCGCCTGAATGAGCTGG
GAATCCGTATGCGCTTTCTAGCCGCCCTACAGGTGCAGCAGGCCATTGCC
GGCATGTTTCCCGCCGCCCAGGCACAGCCCTTTGGCTCGTCGGTCAACGG
ATTTGGGCGAATGGGCTGCGACCTGGACCTCATCCTGCGCTTTGACAGCG
ATATGGGAGCTAAGATCCCACTGGAGGCGGCGGTGCCCTCGCGACTCGTG
TACCACACCAAGGAGAACCTGAGCAACGGACGCTCGCAGACGCAAAGGCA
CATGGAATGTTTTGGAGATATGCTGCATCTGTTCCTGCCCGCGTGTGCCA
TGTGAGACGTATTTTGCAGGCGAGGGTGCCATCATCAGTACCACATGGAG
CATTCTGGACCTGGAGGTGGACCTCTCCATGAGTTACCTCCATGGCCTTT
AAATGTCCGACTGCTATGTTCGGGAATGGATCCCCGTAGGCGTGACTTTA
CATTCGGCTGGGCCAAACTGGAGCTCCAAAT
UFO12057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-RC | 2243 | CG11418-RC | 111..1097 | 82..1065 | 4680 | 98.7 | Plus |
| CG11418-RA | 2319 | CG11418-RA | 111..1097 | 82..1065 | 4680 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1348222..1349080 | 1039..183 | 4040 | 99.1 | Minus |
| X | 23542271 | X | 1349143..1349247 | 186..82 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:01 has no hits.
UFO12057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:01 Download gff for
UFO12057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 108..1088 | 79..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:57 Download gff for
UFO12057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 108..1088 | 79..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:57 Download gff for
UFO12057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 108..1088 | 79..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:57 Download gff for
UFO12057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1348222..1349077 | 186..1039 | 99 | <- | Minus |
| X | 1349144..1349250 | 79..185 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:57 Download gff for
UFO12057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1242255..1243110 | 186..1039 | 99 | <- | Minus |
| arm_X | 1243177..1243283 | 79..185 | 99 | | Minus |
