UFO12058.5prime Sequence
1032 bp (1018 high quality bases) assembled on 2012-06-29
> UFO12058.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCAGTGAGCACT
ACTGCTTGAGGTGGAACAATTACCAATCCAACCTGTTAGGGGTGTTTAGT
CAATTACTACAAGACGGGAGCCTGGTGGACGTCACACTAGTTTGTTCAGA
GGGCACATCCATCAGAGCCCATAAGGTGGTCCTCTCGGCTTGTTCCTCGT
ACTTCCAGAGCCTGTTCCTGGAGCACCCCGAAGGACATCTAATTGTGATA
TTGAAGGACGTCCGTTTTGCCGAGCTGCAAACCTTAGTTGAATTCATGTA
CAAGGGCGAGGTGAACGTGCAATATTGTCAGTTGTCCGCGCTGCTCAAGA
CAGCCGAATCCCTCAAGGTCAAGGGCCTGGCCGAGATGACGAACCAGAAT
ACGACGCTGCGCGAACCGGAACGGGAACCGGATCGCTTGCGTCCGCAGGG
CGGCGGCGGTAGCGGCGGATCCGCCCACAAGGCGGCCGACAGTCCGGCGG
CCGCGCTTGATGCCACAGCGGCCACACAGGCGGCGACTGCCACGGCAACG
GCAACTGCCGCGGCGGCAACATCGACCTCAACCTCAGCAACATCTGCGGC
GGCGACGGCAGCAGCGACAGCAGCAACATCTGCGTCCACAACGGCAACGG
CGGCGGCGGGGAGTAGTAATACAACAACTACAACGGCGGCAACCACAACA
GCAACCTGTGCCACAGCAGCAACATCTACGGCAGCAACATCCTCATCTTC
GTCCGTGACATCAGCAGCAGCAGCCGCAGCAGCAGCCGCATCAGCATCTG
GTGTTGCGCACTCGGAGGAGGCGACCTCGTCATCATCGTCAACTGGCGGG
CAAAGCGGGAGGCTAGCGATCGCAGCAGTCCCACGCCCGCCAACGATCGT
CGCGAATGCATCCGGCGGACTATGTGATGTGTCAGAGATCCGGAACAGAG
CAAACCAGGCGACGAGCTGCTAAGCGAGGAGC
UFO12058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mamo-RC | 4583 | CG45477-RC | 1969..2927 | 81..1032 | 4560 | 98.9 | Plus |
| mamo-RG | 8765 | CG45477-RG | 1740..2698 | 81..1032 | 4560 | 98.9 | Plus |
| mamo-RF | 4535 | CG45477-RF | 864..1822 | 81..1032 | 4560 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13884604..13885227 | 1032..416 | 2710 | 98.2 | Minus |
| X | 23542271 | X | 13885307..13885502 | 419..224 | 980 | 100 | Minus |
| X | 23542271 | X | 13901480..13901627 | 228..81 | 740 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2535 | 615..848 | 371 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2532 | 532..791 | 353 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6952 | 611..844 | 352 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2661 | 562..848 | 331 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6941 | 566..797 | 331 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2490 | 651..848 | 323 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6923 | 635..839 | 317 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7020 | 563..849 | 308 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 593..821 | 307 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2507 | 648..850 | 303 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 668..848 | 303 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6928 | 656..853 | 294 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2833 | 611..849 | 276 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2990 | 629..847 | 265 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3031 | 587..846 | 256 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6842 | 718..848 | 234 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6864 | 722..846 | 230 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2443 | 722..849 | 228 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2889 | 566..842 | 218 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2665 | 566..795 | 207 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..7088 | 566..836 | 207 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6823 | 740..850 | 204 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6806 | 764..848 | 200 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 746..848 | 193 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 602..704 | 191 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2591..2876 | 565..850 | 181 | 54.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 5..194 | 605..791 | 176 | 59.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9035..9224 | 605..791 | 176 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1145 | 614..698 | 173 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 723..815 | 168 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1588 | 718..792 | 150 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9031..9280 | 518..763 | 140 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 689..788 | 137 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1160 | 710..797 | 135 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1589 | 614..697 | 134 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1602 | 630..733 | 129 | 61.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 90..250 | 597..763 | 126 | 57.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9045..9225 | 495..678 | 118 | 55.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3251..3333 | 721..800 | 111 | 61.4 | Plus |
UFO12058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:54 Download gff for
UFO12058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RE | 794..1762 | 70..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:36 Download gff for
UFO12058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RE | 794..1762 | 70..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:43 Download gff for
UFO12058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mamo-RF | 854..1822 | 70..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:43 Download gff for
UFO12058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13884604..13885225 | 418..1032 | 98 | <- | Minus |
| X | 13885309..13885500 | 226..417 | 100 | <- | Minus |
| X | 13901483..13901637 | 70..225 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:36 Download gff for
UFO12058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13778637..13779258 | 418..1032 | 98 | <- | Minus |
| arm_X | 13779342..13779533 | 226..417 | 100 | <- | Minus |
| arm_X | 13795516..13795670 | 70..225 | 97 | | Minus |
