UFO12059.5prime Sequence
1019 bp (883 high quality bases) assembled on 2012-06-29
> UFO12059.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCTCATGCACACAACA
TCAATTTCCACAACGTCGACGGCCACCATGACCAACTCATCGTCCTCCGC
CACGCCCACACCCGGGTCGACTTCCTCCAACAACAGTGCCACGCTCGACG
CGCTGCACCAGCAACAACAGCAGCAGCACCAGCAGCATCAGCTGCAGCAA
CAACTGCAGCAGTTGCACACGAACGCCGCAAACAATTCACGGCCCCCCTC
ACGTGCCCCCTCCATTCTGGACAGTCCGACCCTGGCGCGTGTGGAGCGGG
CTCGTCTGCGACTGGAGCAGCAGGAGCGGGAGCGGGAACGGGAGCGTAGC
AGCCAGCGGGAGGTGGGCGGCGGCAGCGGAGGAGGCGGCGGCGGTGGTAG
CAGCACTGGCACTGGCAGCACCGCCACAACCATGAATCGTGAGGATAGCC
TGGAGCGCAGTATTTTGGATCCCAAGAAAGAAACGGCGCCCTGGCATCAG
ATGTGGACGCACATGAAACGCCTCTCGCACGCCTCCAAAGTCAATTCGAC
GAGCAGTCTGACCGCCCAGAAAACCGATGTGGGCGTGGGCCATCATCCAA
ACATGACACCAAATGCAACAGCAACAACAACGGCAACGGGAACAATGACA
TCAACGCCCGGAAAATGCATTCTATTTCCGGATAAGACGGCCTCCCTGAA
AAGCTCTATGTATACGCAACAGTGTACTTCAGCCCGATATGCAATCCTTT
GCTGGCAGACGCATTCCGGTGGCTCCATGACAGACCCATTAAACGCGACT
GCTCTGGCAGCAAAGGATCGCTCTTCTCTCGCTGAGACGATACTTTGTGC
TCACTCGTGACTACTGCACTGCTCAAAGAGCTCGGGATCGCCATGGACGT
GCTCGATATGGGACAGTTTATCCTCAGGTCAGCTGTTGACGTGGAGAGGT
GATGCTGAATCGGCCTCTT
UFO12059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RD | 3241 | CG32982-RD | 347..1304 | 83..1014 | 4060 | 96.8 | Plus |
| CG32982-RE | 3397 | CG32982-RE | 458..1168 | 83..791 | 3505 | 99.7 | Plus |
| CG32982-RF | 2931 | CG32982-RF | 467..910 | 83..526 | 2220 | 100 | Plus |
| CG32982-RE | 3397 | CG32982-RE | 1214..1460 | 792..1014 | 555 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9127023..9127466 | 83..526 | 2220 | 100 | Plus |
| 2L | 23513712 | 2L | 9135116..9135374 | 525..782 | 1245 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 17:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2435 | 657..716 | 138 | 70 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 425..575 | 555..707 | 129 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1561 | 647..712 | 127 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2418 | 657..705 | 119 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1157 | 666..708 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2370 | 656..705 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2499 | 656..705 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6782 | 656..705 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6803 | 656..705 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1578 | 648..705 | 110 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6872 | 657..705 | 110 | 69.4 | Plus |
UFO12059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:55 Download gff for
UFO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 333..1269 | 83..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:38 Download gff for
UFO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 347..1283 | 83..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:45 Download gff for
UFO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RD | 347..1283 | 83..997 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:45 Download gff for
UFO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9127023..9127466 | 83..526 | 100 | -> | Plus |
| 2L | 9135118..9135384 | 527..791 | 99 | -> | Plus |
| 2L | 9154659..9154760 | 792..889 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:38 Download gff for
UFO12059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9127023..9127466 | 83..526 | 100 | -> | Plus |
| arm_2L | 9135118..9135384 | 527..791 | 99 | -> | Plus |
| arm_2L | 9154659..9154760 | 792..889 | 91 | -> | Plus |
