UFO12065.5prime Sequence
1115 bp (1023 high quality bases) assembled on 2012-06-29
> UFO12065.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGTCTCGACACAAGCCC
GCGTCGGTGGTGCTAACGCTGCTGTTGGTGGTGCTGTTGGCGCTGATCCA
CCACCGCCGCATAGATGCCAGATTCGTGCCCGGTCCGCCTTCAATACCCA
GTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
ATCGAGGGATACTATTACGATCCGATAACATTTGACTGCAAGATGTACAA
GATCGGGGCATGCCACTTGATTCGTGGCCAGAGTTTCGGCAGTCAACAGG
ATTGCATTTCCACCTGCATCCATGGGATACGCCGGAATCATGACTTTTAT
GTGAACGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAACCCTTTAGG
GAAATAGCCAGGTTTCACCGTACACGCCACATCTTGCGAATATATGTGTA
GAACCTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTC
AGTTTGCTCATGAAAACGGTGTACAGGTGACACCTATCCCAATCACCAGC
TCACCGTCTTTCATGCCATACGATCGATGACTCTCAGCGGCGAATGAAGG
TGAATAAGCCGGATT
UFO12065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31777-RA | 383 | CG31777-RA | 17..351 | 75..409 | 1645 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3706583..3706791 | 409..201 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 3706920..3707047 | 202..75 | 610 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 17:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6893 | 149..103 | 127 | 74.5 | Minus |
UFO12065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:05 Download gff for
UFO12065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31777-RA | 14..351 | 75..413 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:09 Download gff for
UFO12065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31777-RA | 17..354 | 75..413 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:09 Download gff for
UFO12065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31777-RA | 17..354 | 75..413 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:09 Download gff for
UFO12065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3706584..3706791 | 201..408 | 100 | <- | Minus |
| 2L | 3706922..3707039 | 83..200 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:09 Download gff for
UFO12065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3706922..3707039 | 83..200 | 100 | == | Minus |
| arm_2L | 3706584..3706791 | 201..408 | 100 | <- | Minus |
