UFO12066.5prime Sequence
1170 bp (1049 high quality bases) assembled on 2012-06-29
> UFO12066.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAACCATGACCA
AGGACTACGACTATCTGCTAAAGGTTCTACTGGTGGGCGACAGCGATGTG
GGCAAGCACGAGATTCTCTCAAACCTGGAGGATCCCTCCACGGAGAGTCC
CTTCTGCAGTGGGAACGCCTACAAGACGACCACCATCCTGCTGGAGGGCA
AGCGGGTGAAGCTGCAGCTGTGGGACACCTCCGGCCAGGGACGCTTCTGC
ACGATCATTCGCTCCTATTCGCGCGGCGCCCAGGGCATCATCCTCGTCTA
CGACATCACCAACAAGTGGAGCTTCGACGGTATCGATCGGTGGCTCAAGG
AGGTCGACGAGCACGCCCCAGGAATTCCGAAGGTTCTTGTCGGGAATCGC
CTGCACTTGGCCTTCAAGCGACAGGTGGCGGCCAAACAGGCCGAGACCTA
CGCCAGCCGCAACAATATGTCCTGCTTCGAGATATCGCCTCTCTGCAACT
TCAACATCCGCGAGTCCTTTTGCGAACTGGCGCGGATGGCCCTGCATCGC
AACGGCATGGAGCACATCTGGCGCAGCAATAAGGTGCTGTCGCTTCAGGA
ATTGTGCTGCAGGACAATTGTGCGAAGGACGAGCGTGTATGCGATCGATT
CGCTGCCGCTGCCGCCGTCGGTGAAGTCGACGCTCAAGTCATACGCGCTG
ACCACGTCCCAGTGCTTCAATTCACTGACCCAGAGCTCCAAGAGCAAGAA
CCGCTGCAAGACGCCGACGAGCAGCAGTCGGAATAGCTGTGCGATCGCGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGTCGGCAAC
CGGAGCGTTCTGAACAAATCCAGATGGAGTTCTGGAGGTCATACTGGATC
TATCAACAGGAGTCCAAGCGGAGCTCGATAATCAAATTACGCCCCCGCCC
TGCCACCTCATCGGCAGTACTGTTGTAATTCATTCAGGCCATTCTGGGCG
GACTGAAGCCATCACAACCG
UFO12066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RC | 1449 | CG1900-RC | 110..876 | 83..849 | 3835 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 249..1015 | 83..849 | 3835 | 100 | Plus |
| Rab40-RB | 1618 | CG1900-RB | 413..1045 | 217..849 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 634..410 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460369..12460584 | 849..634 | 1080 | 100 | Minus |
| X | 23542271 | X | 12461456..12461650 | 411..217 | 975 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 217..83 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 363..244 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:23 has no hits.
UFO12066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:05 Download gff for
UFO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 240..1011 | 75..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:10 Download gff for
UFO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 244..1015 | 75..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:11 Download gff for
UFO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 244..1015 | 75..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:11 Download gff for
UFO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12460369..12460583 | 635..849 | 100 | <- | Minus |
| X | 12460989..12461211 | 412..634 | 100 | <- | Minus |
| X | 12461456..12461649 | 218..411 | 100 | <- | Minus |
| X | 12461736..12461880 | 74..217 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:10 Download gff for
UFO12066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12354402..12354616 | 635..849 | 100 | <- | Minus |
| arm_X | 12355022..12355244 | 412..634 | 100 | <- | Minus |
| arm_X | 12355489..12355682 | 218..411 | 100 | <- | Minus |
| arm_X | 12355769..12355913 | 74..217 | 96 | -> | Minus |
