UFO12067.5prime Sequence
1098 bp (971 high quality bases) assembled on 2012-06-29
> UFO12067.5prime
CAGTCGACATGCAGTTTACATTTGAGTGCAAAAGAAAGCGCTGCTTTAAT
AAGAATGCGAATTTCACGCCTCTTCCAAGTGGACAGGATGGCGAACGTTA
CAAGGGAAGATTTACAGGACTATCCGTCGAGATAGTTGATCCCGAACAGG
CTAAATCCCTGCACGATAATGGTTGTTTTGGCAAGGGAAGCAAATCTCGC
GGAGGGCCAGCAAGTGGAGACGAGAACGAAACCCTGTTTCTCGGAATGGA
AGAGTCTTGCTTCCTGGCCCACTATTTAAATGTTTTAGATATAACCAACT
CAGCTGGTTATTTAATGGACTTCTGCATGTTTGTGGAGGTCGCCAAAGAG
CACAATGAGAAATTTGTTGAGAACTTGGCCAGCTATGTGTATTTGAAGTC
CAAGAATTGGGTCATCAAGAGCGGTATTAAGTTCGGCGGTGATTTTCTTA
TCTACAAGCAAAGTCCTCGATTGTACCATGCCAGCTTTTTGGTCATTGTG
CAAAAGCCTGGTGATACGGATCACTATCAATCAAAGAACTTGAAGGGTGT
TCAACGCGTGGCAGAAACTTCTGATAAGGATGTGCTGCTCCTGACTGTCC
AACCGCCTAAGAAGATAAGCTCTTCCAGGGATTTGCAGGAAGCCACAGTA
ACAGAGACTATTGTGCGGCGTTTTATTACTTAACTTTTGTACAAAGCAAA
CAACAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGAATCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCACCAGGAGTCCAAGCGAGCTCGATATCAAATACGCCCGCC
CTGCCACTCATCGCAGTACTGTTGTTAATTCATAAGCATTCTTGCGACCT
GAAGCCAATCCAAAACGGCATGATTGACTGACTCGCCAGCGGCATCAGCA
CTTGTCGCTTGCGTATATAATTTTGTCCATGTGAAACGGGGGCCAGAA
UFO12067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31812-RB | 1369 | CG31812-RB | 2..700 | 9..706 | 3455 | 99.7 | Plus |
| CG17996-RA | 529 | CG17996-RA | 457..529 | 706..635 | 340 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16729778..16730216 | 9..447 | 2180 | 99.8 | Plus |
| 2L | 23513712 | 2L | 16730271..16730530 | 448..706 | 1250 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:54:26 has no hits.
UFO12067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:06 Download gff for
UFO12067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31812-RB | 1..703 | 9..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:13 Download gff for
UFO12067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31812-RB | 2..704 | 9..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:14 Download gff for
UFO12067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31812-RB | 2..704 | 9..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:14 Download gff for
UFO12067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16729776..16730216 | 6..447 | 99 | -> | Plus |
| 2L | 16730271..16730534 | 448..711 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:13 Download gff for
UFO12067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16729776..16730216 | 6..447 | 99 | -> | Plus |
| arm_2L | 16730271..16730534 | 448..711 | 98 | == | Plus |
