UFO12069.5prime Sequence
1022 bp (1008 high quality bases) assembled on 2012-06-29
> UFO12069.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTTGTCGAATCAAGA
TCTCAGTCTGAGTTTAATCGTTATCCTGGCCGTAACTACGGTTGGTCAGG
CCGCGCCTTCCATATCAAGGGTGGTCAATGGTACGGACTCCAGTGTGCTG
AAATATCCTTTCGTGGTATCCCTAAGGAGCTACGATGGCTCGCATTCCTG
CGGTGGTTCTATTATTTCAAAACATTTTGTGATGACCGCTGCTCATTGCA
CCAATGGTCGACCTGCGGATACCCTATCAATTCAGTTTGGAGTGACCAAT
ATTAGTGCCATGGGTCCGAATGTGGTGGGCATAAAGAAGATAATCCAGCA
CGAAGACTTTGATCCCACTCGCCAAAATGCAAATGACATCTCGCTGCTGA
TGGTGGAGGAACCTTTTGAGTTCGATGGCGTCTCTGTGGCCCCGGTGGAA
CTGCCAGCTCTGGCTTTTGCTGTGCCTCAATCGGATGCTGGAGTCGAAGG
AGTGCTCATCGGTTGGGGTCTCAATGATACTTATGGAAGTGTGCAGGACA
CCCTACAGGAGGTTTCCCTGAAGATTTACTCGGATGAAGAGTGCACCAGC
CGGCACAATGGCCAAACGGATCCCAAATATCACATATGCGGAGGAGTAGA
CGAAGGAGGAAAGGGACAGTGCAGTGGAGATTCGGGCGGACCCCTCATCT
ACAATGGCCAGCAAGTGGGCATCGTGTCGTTAGCATTAAGCCCTGCACCG
TGGCTCCCTATCCGGTTGTCTACTGTAAGGTTAGCCAGTACGTTGACTGG
ATCAAAAGCAACCAAATCATATCGGCTGCAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCATATCATATCATAT
CCAACTAGCCTAGGAGATCCTGTCATGACTAGGCTGGATTCTCACAATAA
AAACGCCCGCGCGCACCGAACG
UFO12069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12951-RA | 857 | CG12951-RA | 7..801 | 84..877 | 3920 | 99.6 | Plus |
| CG16749-RA | 873 | CG16749-RA | 94..779 | 171..855 | 1020 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9329641..9330004 | 578..215 | 1820 | 100 | Minus |
| 3R | 32079331 | 3R | 9329279..9329578 | 877..579 | 1420 | 99 | Minus |
| 3R | 32079331 | 3R | 9330191..9330325 | 218..84 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 9330979..9331166 | 855..669 | 590 | 88.8 | Minus |
| 3R | 32079331 | 3R | 9331322..9331662 | 576..236 | 445 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:30 has no hits.
UFO12069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:07 Download gff for
UFO12069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..798 | 84..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:15 Download gff for
UFO12069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..804 | 80..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:16 Download gff for
UFO12069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..804 | 80..881 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:16 Download gff for
UFO12069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9329276..9329578 | 579..881 | 98 | <- | Minus |
| 3R | 9329641..9330003 | 216..578 | 100 | <- | Minus |
| 3R | 9330194..9330325 | 84..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:15 Download gff for
UFO12069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5154998..5155300 | 579..881 | 98 | <- | Minus |
| arm_3R | 5155363..5155725 | 216..578 | 100 | <- | Minus |
| arm_3R | 5155916..5156047 | 84..215 | 100 | | Minus |
