UFO12070.5prime Sequence
1110 bp (984 high quality bases) assembled on 2012-06-29
> UFO12070.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCTTCACAAGCTGAC
TTGGGTTCTAATATTTATACCTGCTTTTCGAGCTGCCGATCCCATTTGCT
CTCAAAGGCCGGATGTAACTGCCTTGAGAAACTGTTGCAAGCTGCCTAAT
CTGGACTTTTCGAGTTTCAACTCCAAGTGCAGTCAGTATTTGGTCAATGG
AGTCCACATATCACCTTGCAGCTTTGAGTGCATCTTTCGAGCGGCGAATG
CATTAAATGGCACCCATTTGGTTATGGAAAATATCGAAAAGATGATGAAA
ACCATTTTGGGCTCTGATGAATTTGTGCACGTGTATCTGGATGGATTCAG
GAGCTGCGGTAATCAGGAGAAGGTGCTCATTAAGGCAATGAAACGTCGCC
GTGTTCCCATCACCGGAAAATGTGGCTCGATGGCGATAATGTATGGCCTG
TGTGCCCATCGATATGTCTACCGTAATTGCCCGGAAAGCGTGTGGAGCAA
GAGTGCCACCTGCAATGAGGCCAGGGAATACAGCATTCGCTGCGATGACA
TGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AGCCATCACAAACGGCATGATGATCTGATCGCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGTGAAGAAGTGTCAT
ATGTCACGTTTAATCAACTGTGAAACTCACCAGGGATGCTGAAACGAAAC
TTCCATTAACCTTAAGATAGGCAGTTCACGTAAGGCAATCTGCATAAGTG
TAGACTGCGG
UFO12070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50d-RA | 587 | CG30074-RA | 12..535 | 79..602 | 2605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14373421..14373756 | 267..602 | 1680 | 100 | Plus |
| 2R | 25286936 | 2R | 14373266..14373361 | 171..266 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 14373119..14373211 | 79..171 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:54:04 has no hits.
UFO12070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:01 Download gff for
UFO12070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50d-RA | 1..522 | 84..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:58 Download gff for
UFO12070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50d-RA | 4..538 | 68..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:00 Download gff for
UFO12070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50d-RA | 4..538 | 68..606 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:00 Download gff for
UFO12070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14373266..14373361 | 171..266 | 100 | -> | Plus |
| 2R | 14373111..14373210 | 68..170 | 95 | -> | Plus |
| 2R | 14373421..14373762 | 267..615 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:58 Download gff for
UFO12070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10260616..10260715 | 68..170 | 95 | -> | Plus |
| arm_2R | 10260771..10260866 | 171..266 | 100 | -> | Plus |
| arm_2R | 10260926..10261267 | 267..615 | 97 | -> | Plus |
