UFO12073.5prime Sequence
645 bp (555 high quality bases) assembled on 2012-06-29
> UFO12073.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATCCCAATAAGC
TCATCAAAATTAAATAGGAAACTGGCAAGTAAACCCTTCCTAAATGAAGG
ACTACCTGCCAGAAAGTCTATCGGTTGTCTTTTTCTTGGCATAATACTTG
GAGTTTTTTTAGCCGGAATACTCTTTTACTCGCTGATGAACGAAGACTGC
CGGAAAAGTTCGAGGAATATAATGAGCATTATTGGAGTGGAAATACCTCA
AAACAAAAACGCCACATCGAAATTGGATACTGCCGCAAAAAATGTAGAAG
AGAGTAGCGTAGCGGTTACACAAGAAACCCCTGCTGAATTTAATAAAGCT
GATAATAATTCAACAGTTTCAATGCCCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGGAGAATCCTGGGTCATGAACTAGTGGCTTT
GGAATTCCTCACCCAATTAAAAAAAACGGCCCCGGGCGGGCCAACCGAAG
CCGTTTCTGAACAAATTCCAGAATGGGAAGTTTCTGAAGGTCATT
UFO12073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43084-RA | 450 | CG43084-RA | 40..381 | 86..427 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15651043..15651323 | 147..427 | 1405 | 100 | Plus |
| 3L | 28110227 | 3L | 15650891..15650955 | 86..150 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:54:39 has no hits.
UFO12073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:09 Download gff for
UFO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43084-RA | 1..345 | 86..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:20 Download gff for
UFO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43084-RA | 40..391 | 86..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:20 Download gff for
UFO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43084-RA | 40..391 | 86..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:20 Download gff for
UFO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15650893..15650954 | 88..149 | 100 | -> | Plus |
| 3L | 15651046..15651333 | 150..439 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:20 Download gff for
UFO12073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15643993..15644054 | 88..149 | 100 | -> | Plus |
| arm_3L | 15644146..15644433 | 150..439 | 98 | == | Plus |
