UFO12074.5prime Sequence
1185 bp (1095 high quality bases) assembled on 2012-06-29
> UFO12074.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGATACCGAT
ACGGACGACACCGATCTGCTGCTCCTGATACCACCGAACTTCTGCGCGGA
GGACAAAATGAGCGCATGCGCGGCGGCAGATGCGTTGGCCATGCCCCCGC
CCCCTCCCCCGGCGACCACAAGTGCAGCGTACCAGTTCCTACATCCCAGC
AAGAAATCGGAGCTGAATAGCATCAATTCCCGGCTGCAGAACATCGCACT
GGATGCGGAGGAGCCTCCCTCGGACATTTCCACCATATCCACGAATACTG
TAAGGAACGCTGGAAGGCCAAGTAGGGAGCTCCACGGCATGGTGCACTCC
ACGCCGAAGAGTGGGTCCGTTGAGCCCCTCCGCCATCGACCACTGGACGA
CAACATTCTGCTCGAAATCGACCACTACCTAGACGACAATAATGCGCACC
GTTGGCAGAGGCACGATCACCACCTGCATCACCGCAGCGACGATCATCTG
AGGAACGAGCGGGCGGGGAAAGAGGGTCATCCGGGAACCTCGTCTCTGCC
CAGCATGAGGCTGGCCTCATCATCCTCCGGCGCCGTTTCTGTCGAAGCAG
CCAGGGTCGATCGAAGCAGCCTGAATGAGAACAAGATCATAAGTCTGAGC
GAGCTCTGGGGCAAGAGCAGCTTGACCAAAACTGTACTCGACAACAACTC
GCCCAACCGACCACTGTGCAGCTCTTCCCTAAAAGAGGAACAACTCAGAA
GGCAGCATCTGGAGAAAATGGTGCACACACTGCAGTCGCATCTTTTGGAG
TACCAGCAGCGAATCTCAGTGGCCATCGAGGTGGATCGTTCGAAGGATGC
TGCTCTCACCGAGGCAGAGCAACAGTTCAAAGTCTCAACTACGAGGTTCA
GCACCTGCGGGACGCTGTCCACCGGCTGGAAGCGGACAGGGGCGATCCCA
GAGCCGGGTTTGATGCACTGCAGACGAGTTGTCGCAGGCGGTCACTTGGC
CCCAGGTTTCAGGAAAGATGATAACTCGAAAGGGAGTGGGACCATGCAGC
AGACGCAGCATGGTAGAAGACTGGGAGCACTGAATGCACTCAACGCAGCA
AAGAGCCGAGACCGTACATGCACGATAGCTAGGAT
UFO12074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnb-RB | 2263 | CG5690-RB | 44..1139 | 85..1160 | 4865 | 97.5 | Plus |
| Cnb-RA | 2453 | CG5690-RA | 234..1329 | 85..1160 | 4865 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1947859..1948876 | 85..1095 | 4650 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:54:42 has no hits.
UFO12074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:09 Download gff for
UFO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5690-RA | 229..1268 | 76..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:23 Download gff for
UFO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnb-RA | 228..1267 | 76..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:23 Download gff for
UFO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnb-RA | 228..1267 | 76..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:23 Download gff for
UFO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1947859..1948909 | 85..1121 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:23 Download gff for
UFO12074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1947859..1948909 | 85..1121 | 98 | <- | Plus |
