UFO12078.5prime Sequence
797 bp (723 high quality bases) assembled on 2012-06-29
> UFO12078.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGGATGCCAAAGCTGT
ACATCCCTAGTGACACATCCTAGTTATACAATTAGGCAACATTATCCAGG
TCCTTTAATCACCTACGACGGGGAGGCGCGATGTGAGCCGCGTTTTATTC
GATTTTCGGACTTAACCTTGAGCACAATGGAGCTTATCTTCAATGCTTAT
GGAGACAATGATGATGATGGAACGGATGAAATGAATGAAATGAATGAAGT
GTGTGAAAAGAAGGTAGATGTGGAGGAAAAGTGTGACAAGCAGAGAGAGG
AGCCGGCGTGTGGTAATCCAAGGAAGATCTTTGGCTGCCAAACAAATGCA
CCAATGCACAACTGTAGGTTGAATGGTGGCAGGGAGGAATCCGACTTGGC
AGACGATTCACTCGTCGACAAGGAGCTCCGAGCCCTGGAGGATCGTGCCA
GGGGTATATACGAAATACATATCGAATCTTTTCCAGATTCGCCGTCTTGA
GACTGCCTGAAACCTGCGGAGAAACTGCGCTTTCAATGGAAAGCTTCTAC
TGGAGATGATCTGATGAAAAGTCCTTATGAAAATTTCGCATTGAGTTTAC
CAGAAGTTTCCTCGAAGCTTTTCCCCTTGCCACATGTGCCACTGTTCGAA
AGAGAAAAATCGCGTGGTGCAAGTAAATCGCTGCCAGCGAATGCGTCAAT
ACTGCAGGTTCTACTGTACACGTCGCCATCGGTGCATCGATCCGAAG
UFO12078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31010-RB | 1360 | CG31010-RB | 216..934 | 83..793 | 3330 | 98.2 | Plus |
| CG31010-RA | 1295 | CG31010-RA | 151..869 | 83..793 | 3330 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30705197..30705906 | 785..83 | 3165 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:49 has no hits.
UFO12078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:11 Download gff for
UFO12078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31010-RA | 117..846 | 77..797 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:27 Download gff for
UFO12078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31010-RA | 145..874 | 77..797 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:25 Download gff for
UFO12078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31010-RA | 145..874 | 77..797 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:25 Download gff for
UFO12078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30705183..30705912 | 77..797 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:27 Download gff for
UFO12078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26530905..26531634 | 77..797 | 97 | | Minus |
