UFO12079.5prime Sequence
1147 bp (1048 high quality bases) assembled on 2012-06-29
> UFO12079.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGTTGGACTCAAGTT
TCCGTCGAACCGAACACTGGGCAATATTTGTGTCTACGGTGCGGTGGCCT
CCATATCCGCTGTGATGTACATGAAATGGAAGATGGAGGATCGGGTGAAA
TCCGCAGAGTACTACAAACTGGCCTTGAAGGCACTGCGGAGCCATCGAGG
AGCAGTTGGTCTCCTGGGTGAACCCATCAAGGACTCTGGCATCGATCTGT
CCAACGCCAACAACAATTGCAATGCGGAGGAGGCGCGTTGTGAGGTGGCT
GTGCGGGGCAGCAAGGATAAAGGAACTTTATACTTTTGGGCGTCCAATCA
GCCGGATAGAGGCTGGCTGATCGATCGACTGGAGCTGGAAACAAAACTCA
ACCCAGAGAAACGATTTTTGCTTAAAAAATCCGAGGAACTAACCTTCGAT
CTGCCCGAGAGTATAACCAAACAAACTGCCCAGCAAGTTGATTCCAATGT
CATTCTATCCGCATCGGATCAACAACCAGAAACACATTCAAAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGATCGCAGCGGCATCAGCACCTTGTCGCTTG
CGTATATATTTGCCCATGTGAAACGGGGCGAAGAGTGTCATATGCCACGT
TAAATCAAACTGTGAACTCACCCAGGGATGCTGAAACGAAAAACATATTC
TCATAACCCTTTAGGAATAGCAGTTTTCACGGTACACGCCAATCTGCAAT
ATATGTTGTGAAACTGCGAAATCGTCTTGCATTCACTTCAGCGATGA
UFO12079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15653-RA | 711 | CG15653-RA | 80..589 | 84..593 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21060179..21060468 | 373..84 | 1450 | 100 | Minus |
| 2R | 25286936 | 2R | 21059902..21060124 | 593..371 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:52 has no hits.
UFO12079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:11 Download gff for
UFO12079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15653-RA | 36..556 | 77..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:29 Download gff for
UFO12079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15653-RA | 74..594 | 77..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:28 Download gff for
UFO12079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15653-RA | 74..594 | 77..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:28 Download gff for
UFO12079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21059897..21060122 | 373..598 | 99 | <- | Minus |
| 2R | 21060180..21060474 | 77..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:29 Download gff for
UFO12079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16947402..16947627 | 373..598 | 99 | <- | Minus |
| arm_2R | 16947685..16947979 | 77..372 | 98 | | Minus |
