UFO12080.5prime Sequence
1173 bp (1085 high quality bases) assembled on 2012-06-29
> UFO12080.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCAGACCGGAGTACA
ACTAGCTTTGTTTTTGACCCTCACAATAGCAGCGGTCTACGGAGAGACTG
GATTTTTCCTGAACACACGTCGCGTCCAGGAAAATGCACAGCCAATCGAG
GCGGAAGTGGAGGCTCTGGTAAGGAGCTCCTTCTATGCCGCAGATCCAAC
AGTCGTAACTATTCCCCGCTGGCTTGGCAATATCTCCTCGCCGGAAATCC
CCGCGGTGGTTTCTGCCCGACTTCAGCAGCAGGACAGCAATATAATCAGT
GTTGATCTATCTGAAGCCAATGATGAAACAGAGATCATCGACAGCGTGGC
CAGTTTGGTGATCGTTCTACACAATCAATTCGATATGCCACTGGATCGCA
TTCTGGTCGTGGGCTTCGCGGAGGGCGCCCATTTGGCAGGTGGGGTGGCT
GCCAAGGTGCAGCAGGACCTGGGTCGCCAGTTGTCGCAGATTACAGCTCT
TGATCCTTCCTCTGGCGCGGAACTAGACCACAAGCTGTCCCAAGCCGATG
CTGAGTTTGTGGAGGTTGTGCACACAAATGCCGGAGGAGAGGGCACTTGG
GAGCGACTGGGTCATGTGGACTACTATCCCAACGGAGGACAAACGCAGCC
TGGCTGCACCACGGACTCCTGTTCGCACGAGAGAGCCTTCGAGCTGCTCG
CCGAGATGTGGTCGCCGGAGAATGACTTTGTGAGCGCCCGTTGTGGTTCG
GTGGAGACTTTAAGTGCCTCCAGCTGCCGCTGGTCCACACACAAAATGGG
CCAAAAACAGGAGGAGGAGCAGCCTGCCTCAGCATCTATTTCCTGAGACC
CGACAGTCCTCACCCTTCTCCCGTGGAGCATACTTCATAAGCTTCCTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAAT
CATATCATAATCATATCATAATCACACTAGCCTAGAGATCCTGGTCATGA
CTAGTGCTGATCTCACCAATAAAAACGCCCGCGGCAACCGACGTCTGACA
GTCAGATGGAGTTCTGAGGTCATACTGAATCTATCACGGAGTTCAAGGGG
CCGAATTCATTAGCCCGCTTGCA
UFO12080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10116-RA | 918 | CG10116-RA | 1..873 | 84..954 | 4300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13456253..13456955 | 954..254 | 3400 | 99.6 | Minus |
| 3L | 28110227 | 3L | 13457010..13457128 | 253..135 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 13457187..13457238 | 135..84 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:55 has no hits.
UFO12080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:12 Download gff for
UFO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..878 | 84..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:31 Download gff for
UFO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..878 | 84..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:29 Download gff for
UFO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10116-RA | 1..878 | 84..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:29 Download gff for
UFO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13456248..13456955 | 254..961 | 99 | <- | Minus |
| 3L | 13457010..13457127 | 136..253 | 100 | <- | Minus |
| 3L | 13457187..13457246 | 76..135 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:31 Download gff for
UFO12080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13449348..13450055 | 254..961 | 99 | <- | Minus |
| arm_3L | 13450110..13450227 | 136..253 | 100 | <- | Minus |
| arm_3L | 13450287..13450346 | 76..135 | 93 | | Minus |
