UFO12081.5prime Sequence
1142 bp (1043 high quality bases) assembled on 2012-06-29
> UFO12081.5prime
ACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAAC
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAAAGTTTT
TGGGCATCAACCGGCTGACAAAGCTGTTCCAGATGGTCCGCGAAGCCGGA
GGACTGAAGCAAGCGTACCTGAAGCTCTATAGGAACGATGATCTGAAGAT
CGGAACCCTGGTGGGCATCGACAAGTACGGCAACAAGTACTTCGAGAACC
CGTACTACTTCTACGGCCGCAATCGCTGGATCGAGTTCGCCCCCCACGTC
AACATGGACTACGATGGATCCATGATTCCCGCCGAGTGGTACGGCTGGAT
GCACTACAAGACCGATCTGCCTCCCATTCGCGATGGATGCCGCCCCAAGT
ACAAGTGGATAGCGGACCACAGCGAGAATCTTTCCGGAACTAAGGAGGCC
TACTACCCCTACTCCACAACACCCAACAAAGTGGAGGCCTGGGAACCCAA
GGCGAAGAAGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCATATCCCTTTA
GGGAATAGGCCAGGTTTTCACGTACACGCACATCTGCGAATATATGTGTA
GAACTGCGAAATCGTCTGTATTCACCTAGAGCGATGAACGGTTTCAGTGC
TCATGAAAACGTGTACAAGTGAACACTATTCCATATTACAGC
UFO12081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3214-RB | 618 | CG3214-RB | 33..460 | 86..513 | 2140 | 100 | Plus |
| CG3214-RA | 621 | CG3214-RA | 93..519 | 87..513 | 2135 | 100 | Plus |
| CG3214-RC | 677 | CG3214-RC | 149..575 | 87..513 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2579619..2579798 | 360..181 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 2579859..2579955 | 183..87 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 2579483..2579569 | 445..359 | 435 | 100 | Minus |
| 2L | 23513712 | 2L | 2579359..2579427 | 513..445 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:59 has no hits.
UFO12081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:13 Download gff for
UFO12081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3214-RB | 39..469 | 83..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:33 Download gff for
UFO12081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3214-RB | 30..460 | 83..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:30 Download gff for
UFO12081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3214-RB | 30..460 | 83..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:30 Download gff for
UFO12081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2579359..2579426 | 446..513 | 100 | <- | Minus |
| 2L | 2579483..2579567 | 361..445 | 100 | <- | Minus |
| 2L | 2579619..2579796 | 183..360 | 100 | <- | Minus |
| 2L | 2579860..2579955 | 87..182 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:33 Download gff for
UFO12081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2579619..2579796 | 183..360 | 100 | <- | Minus |
| arm_2L | 2579860..2579955 | 87..182 | 100 | == | Minus |
| arm_2L | 2579359..2579426 | 446..513 | 100 | <- | Minus |
| arm_2L | 2579483..2579567 | 361..445 | 100 | <- | Minus |
