UFO12084.5prime Sequence
650 bp (471 high quality bases) assembled on 2012-06-29
> UFO12084.5prime
AACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAA
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCAAATAC
CCACTGATACTACTTTTGATTGGCTGTGCCGCTGCCCAGGAACCAAGGCG
CGATGGAGAGTGGCCTCCGCCAGCGATTTTAAAACTGGGCAAGCACTTCC
ATGACATTTGTGCTCCCAAAACTGGCGTTACTGATGAGGCCATCAAGGAG
TTCAGCGATGGGCAAATTCATGAGGACGAGGCCCTCAAGTGCTATATGAA
CTGCCTCTTCCACGAGTTCGAGGTGGTCGACGACAATGGGGATGTCCACA
TGGAGAAGGTCTTGAACGCCATTCCGGGAGAAAAGCTGAGGAACATTATG
ATGGAGGCTTCCAAGGGATGCATTCATCCCTGGGGGGCGACCCCCTGGTG
CCACCAAAGCCTGGTGGGTTCCCACCAATGCTGGAAGAAGGGCTGATCCT
GTCCAACTACTTTTTGGTCGCAAGCTTTCTAAGAACAATTCGTTTGGGCG
CGGCGGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAATCAT
AATCCCAACTAGCCTAAGAGGATCCTGGTCAATGACTAGTGGCTTGGAAT
UFO12084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83b-RA | 528 | CG11422-RA | 15..446 | 89..528 | 1940 | 97.3 | Plus |
| Obp83a-RC | 823 | CG11421-RC | 408..532 | 239..363 | 370 | 86.4 | Plus |
| Obp83a-RB | 885 | CG11421-RB | 470..594 | 239..363 | 370 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5976259..5976543 | 528..236 | 1045 | 95.2 | Minus |
| 3R | 32079331 | 3R | 5976594..5976671 | 236..159 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 5972500..5972624 | 363..239 | 370 | 86.4 | Minus |
| 3R | 32079331 | 3R | 5976732..5976803 | 160..89 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:54:36 has no hits.
UFO12084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:08 Download gff for
UFO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-E-RA | 10..451 | 84..535 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:19 Download gff for
UFO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 10..451 | 84..535 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:18 Download gff for
UFO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 10..451 | 84..535 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:18 Download gff for
UFO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5976254..5976542 | 237..535 | 94 | <- | Minus |
| 3R | 5976594..5976669 | 161..236 | 100 | <- | Minus |
| 3R | 5976732..5976808 | 84..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:19 Download gff for
UFO12084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1801976..1802264 | 237..535 | 94 | <- | Minus |
| arm_3R | 1802316..1802391 | 161..236 | 100 | <- | Minus |
| arm_3R | 1802454..1802530 | 84..160 | 97 | | Minus |
