UFO12088.5prime Sequence
1120 bp (1042 high quality bases) assembled on 2012-06-29
> UFO12088.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTACATAGCCGGGC
TGGCCGGTTTGGGCTTAATAGTTTTGGTATCGATCTACAAATGTGCCAGT
GGCGAGGTTCGCCAGGCGGAAAGCGAAAAGTGCTTCTTCTGCGACTTCGC
CCACCGCCGCCAAGGACCGCCGCCCATCCTGGAGGTGGAGACGGACGAGT
ACGTGATCTTCAAGGACAAGTATCCGGCAGCCAGACTCCACTATCTGGCG
ATTCCCAAGGAGCACTTCGACAGCCTGAAAGCGCTGAACAAATCGCACGT
TGGATTGGTGCGGCGAATGGAGCAGGGCATGATGGAATTCCTGCGATCGC
AGAACGTGGATCCCAAGGAGGCGATTGTGGGCTTCCACTTGCCGCCGTTC
ATCTCGGTTCGCCACCTCCACCTGCACGGCATTTTCCCGCCTGCCGACAT
GAGTTTCGGCAACAAGATCAGCTTTATGCCCTCATTCTGGTTCAAAAAGT
CCAGTGATGCGATTCGGGAATTGGAGGACCGGGAACTGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TATATTTGCCCATGGTGAAACGGGGGCGAAGAGTGTCCATATTGCCACGT
TAAATCAAACTGGTGAACTCACCCAGGATGCTGAAACGAAAAACTATTCT
CATAGCGTAAGAAATAGCCAGCTTCACGTACCGCAATCCTGCCAATATAT
GTGTAGACTGCGATTCGTCT
UFO12088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15362-RA | 813 | CG15362-RA | 135..638 | 85..588 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1981310..1981583 | 85..358 | 1370 | 100 | Plus |
| 2L | 23513712 | 2L | 1981641..1981832 | 358..549 | 960 | 100 | Plus |
| 2L | 23513712 | 2L | 1981884..1981924 | 548..588 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:55:05 has no hits.
UFO12088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:14 Download gff for
UFO12088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15362-RA | 1..507 | 85..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:37 Download gff for
UFO12088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15362-RA | 135..638 | 85..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:34 Download gff for
UFO12088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15362-RA | 135..638 | 85..588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:34 Download gff for
UFO12088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1981310..1981583 | 85..358 | 100 | -> | Plus |
| 2L | 1981642..1981832 | 359..549 | 100 | -> | Plus |
| 2L | 1981886..1981924 | 550..588 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:37 Download gff for
UFO12088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1981310..1981583 | 85..358 | 100 | -> | Plus |
| arm_2L | 1981642..1981832 | 359..549 | 100 | -> | Plus |
| arm_2L | 1981886..1981924 | 550..588 | 100 | == | Plus |
