UFO12089.5prime Sequence
915 bp (782 high quality bases) assembled on 2012-06-29
> UFO12089.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGGCAAAAGTTA
TTATTGCGACTACTGCTGTTGCTTTCTGAAAAACGATCTGAATGTGAGGA
AATTGCACAATGGTGGTATTGCACACGCAATTGCAAAGAGCAACTATTTG
AAGCGTTACGAGGATCCCAAAAAGATTTTGACTGAAGAGCGGCAGAAAAC
TCCTTGCAAGCGATACTTTGGCAGTTACTGCAAGTTTGAAACATATTGCA
AGTTTACCCACTATAGTGGCGATAATCTACGGGAACTGGAGAAGTTGGTT
CTCGCTAGAAAGAAGAGAAAATCCCGAAAGAAAACCAACAAATGCAAGAG
ATGGCCCTGGAAAACTCATCTGCGAAAGGGATTACCCCCTTCCTTGCAAC
CCATTAACCCGGAAAAACTCAAGCAAACCGACTTTGAACTCAGTTGGGGC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCACAGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGCCTGCACTC
ATCGCAGTACTGTGTACTCATAGCATTCTGCGACATGAGCATCACAAACG
CATGATGACCTGATCGCAGCGCATCAGCACTGTCGCTGCGTATAATATTT
GCCATGTGAACGGGGGAGAGTTGTCTATTGCACGTATCAACTGTGACTCA
CCAGATGCTGAACGA
UFO12089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31922-RA | 497 | CG31922-RA | 54..470 | 84..500 | 2085 | 100 | Plus |
| Plap-RC | 2746 | CG5105-RC | 3..132 | 213..84 | 650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1170610..1170762 | 348..500 | 765 | 100 | Plus |
| 2L | 23513712 | 2L | 1170418..1170553 | 213..348 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 1170234..1170363 | 84..213 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:55:08 has no hits.
UFO12089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:15 Download gff for
UFO12089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31922-RA | 47..473 | 76..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:38 Download gff for
UFO12089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31922-RA | 47..473 | 76..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:36 Download gff for
UFO12089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31922-RA | 47..473 | 76..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:36 Download gff for
UFO12089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1170227..1170363 | 76..213 | 97 | -> | Plus |
| 2L | 1170419..1170553 | 214..348 | 100 | -> | Plus |
| 2L | 1170611..1170765 | 349..504 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:38 Download gff for
UFO12089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1170419..1170553 | 214..348 | 100 | -> | Plus |
| arm_2L | 1170227..1170363 | 76..213 | 97 | -> | Plus |
| arm_2L | 1170611..1170765 | 349..504 | 98 | == | Plus |
