UFO12092.5prime Sequence
1144 bp (1053 high quality bases) assembled on 2012-06-29
> UFO12092.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTAATATTGT
ACAGTATATTGTAGTTCGCAGCGACTTGCGTTCCGCCCTTAGTTGGCCCT
TGGGGGCGGTGATCGCTCAGAGTTGCCATGCCACAGCCGCCGTCATTCAC
TTGAATTCCGAGGACGCCGACACTGTGGCCTACTTGAACGATCTGGATAA
TATGCACAAAGTGGTGCTGGAGGCCAAAGATGAGAGTGCTCTGGTCAAGC
TCAGTGAAAAGTTAAAGGAGAACGAGATTAAACACAAGTTGTGGATCGAA
CAGCCCGAAAATATCCCAACCTGCATCGCCTTGAAACCTTATGTTAAGGA
CACGGTTCATAAATATGTCAAGCACCTTAAGCTTTTAAAAGAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAACATATTCTCAATAAACCCTTTAGGGAAATAGCCAGGTTTT
CACCGTACACGCCACATCTTGCGAATATATGTGTAGAACTGCGAAATCGT
CGTGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCCTCATGAAAAC
GGTGTACCAGTGACACTATCCGTATTCCACCAGCTCCACGTCTTTCATTG
GCATACGAAATCGATGAGACATTCATCAGCGGCCAGAAGTGGAT
UFO12092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14903-RA | 442 | CG14903-RA | 33..391 | 85..443 | 1795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16573532..16573720 | 273..85 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 16573230..16573402 | 443..271 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:55:17 has no hits.
UFO12092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:17 Download gff for
UFO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14903-RA | 29..396 | 79..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:45 Download gff for
UFO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14903-RA | 29..396 | 79..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:41 Download gff for
UFO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14903-RA | 29..396 | 79..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:41 Download gff for
UFO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16573230..16573400 | 273..443 | 100 | <- | Minus |
| 3R | 16573533..16573720 | 85..272 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:45 Download gff for
UFO12092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12398952..12399122 | 273..443 | 100 | <- | Minus |
| arm_3R | 12399255..12399442 | 85..272 | 100 | == | Minus |
