UFO12093.5prime Sequence
1116 bp (1037 high quality bases) assembled on 2012-06-29
> UFO12093.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGACAGCGGCGAGGT
GAAAATATCTTTGGAGGATTCCCCCAGCTCCGGGGAAAGTTTCGCCAGTA
CAACCAGTGGACCATGTTGCGGTTCTGGCAGGGATTTGGATATTCAGGTG
CATGAAAGCCATATAAAAGACGACCAGTTCCCATCCAGGGCCACCAGTGA
ATTACAAGAATCCAAAAAATCGAACAAGAAATGTTCCAGCGATCTTTCGA
CAGAGAATAGCTATGCTGCCAACAAAAATGTAGCTGAAGGCCTAATGGAT
ATAGCTTTGCTTTCGGCGAATGCGAATCAGTTGCGATTCCTGATCACCTA
TAACGACAAGGCTTCCACGTACATATACAGCATGATTATGGTGATACTTT
CCCTGGTGCTGCAGCTTTTAGTTGGCATAATGCTGATCTTTAAACGACGT
CTCAAGCGATTTAGGAACCGAAGTTACGAAAGAACCAACGATCTGCTCGT
AATGGGAGTTTTCATGATCACAGTGATCAACATTCTGCTGGCCGCATTTA
CCACAACGGATGGAGGAGGCAGTCATGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGACCTG
ATCGCAGCGCATCAGCACTTGTCGCTTGCGTATATATTTGCCCATGTGAA
ACGGGGCGAGAGTTGTCATATTGCACGTTTATCAACTGTGACCCACCAAG
ATGGCTGAACGAAAACAATTCTCATAACTTTAGAATAGGCAGTTCACGTA
CCGCAATTCTTTGGCA
UFO12093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijB-RA | 741 | CG11637-RA | 1..543 | 84..626 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18892383..18892639 | 84..340 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 18892739..18892895 | 338..494 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 18892949..18893080 | 495..626 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:55:20 has no hits.
UFO12093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:17 Download gff for
UFO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11637-RA | 1..543 | 84..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:48 Download gff for
UFO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijB-RA | 1..543 | 84..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:43 Download gff for
UFO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijB-RA | 1..543 | 84..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:43 Download gff for
UFO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18892741..18892895 | 340..494 | 100 | -> | Plus |
| 3L | 18892949..18893080 | 495..626 | 100 | == | Plus |
| 3L | 18892376..18892638 | 79..339 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:48 Download gff for
UFO12093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18886049..18886180 | 495..626 | 100 | == | Plus |
| arm_3L | 18885476..18885738 | 79..339 | 99 | -> | Plus |
| arm_3L | 18885841..18885995 | 340..494 | 100 | -> | Plus |
