UFO12094.5prime Sequence
1129 bp (1025 high quality bases) assembled on 2012-06-29
> UFO12094.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGAATCGCGCG
ACGCGGAAGAAATATCGCCGGATTCGACTCCACATTTTCCTGGCATTATC
CCTATGGTTCCTGATCGAGGCTCATCCCGTCGAAGGAACACGGTGCAGGA
ATCCCTATGAGAGGGTACGGGAAAACTATTGCTACTTCGTTGCTGACGAG
GAACCGCTGCACACATCGTTCCATAACTTTTGCTATCAGGACAAGCGCAC
CTCACGAGTTTGCCTGGATAGTGACGAGGAAATGCGCGTTCTGGCCCATC
ACCTGGCCAACTTGGGCTACCCGAACGGCACGCAGTTCTGGAGCGCCGGG
CATCGATGGCCGGGTGATAACCGCTTCTACTGGAACTACTTTGGCAGAGC
CCGACCGCTCAACTACTCCAACTGGGCGGTGGACGAGCCGACGCCCCAAA
TGGGCCGCAATTGCCTGATCCTCACTCTCCAGGGTGGAGAACTCATCATG
AGCAGTGAGTCCTGCTACACCCGAGCGGTCGATATCTGCGAACAGACGCT
GAACGGCACGGATTCCCGTCCCGTAATCCACGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGAAGCCATCACAACGGCATGATG
AACCTGATCGCCAGCGGCATCAGCACTTGTCGCTTGCGTATATATTTGCC
CATGTGAAACGGGGCGAGAGTTGTCATATTGTAAGTTTAAATCAAACTGT
GTACTCACCAGGATGCTGAAACGAAAAACTTTCTCAATATCTTAGGATAG
GCAGCTTCACCGTTACCGCCACCTGCCAA
UFO12094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13086-RB | 690 | CG13086-RB | 20..565 | 86..631 | 2730 | 100 | Plus |
| CG13086-RA | 617 | CG13086-RA | 20..565 | 86..631 | 2730 | 100 | Plus |
| CG13086-RC | 572 | CG13086-RC | 148..520 | 259..631 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19364973..19365345 | 259..631 | 1865 | 100 | Plus |
| 2L | 23513712 | 2L | 19364394..19364567 | 86..259 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:55:02 has no hits.
UFO12094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:36:13 Download gff for
UFO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13086-RA | 1..546 | 86..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:35 Download gff for
UFO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13086-RA | 10..565 | 74..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:33 Download gff for
UFO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13086-RA | 10..565 | 74..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:33 Download gff for
UFO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19364974..19365345 | 260..631 | 100 | == | Plus |
| 2L | 19364384..19364567 | 74..259 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:35 Download gff for
UFO12094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19364974..19365345 | 260..631 | 100 | == | Plus |
| arm_2L | 19364384..19364567 | 74..259 | 97 | -> | Plus |
