UFO12096.5prime Sequence
590 bp (479 high quality bases) assembled on 2012-06-29
> UFO12096.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTAAGATATCGC
TATACGGCCTGGACGCAAGTCCGCCAACACGGGCATGTCTGCTCACCCTG
AAGGCACTGGATCTGCCCTTCGAATTTGTGTTCGTCAATCTGTTCGAGAA
GGAGAACTTTAGCGAGGACTTCTCGAAGAAGAATCCACAGCACACGGTGC
CACTGCTGCAGGACGATGATGCCTGCATCTGGGACTCCCATGCCATCATG
GCGTATCTGGTGGAAAAGTACGCGCCAAGCGATGAGCTCTATCCCAAGGA
TCTGCTGCAGCGTGCCAAAGTGGACCAATTGATGCACTTCGAGTCGGGTG
TCATCTTCGAGTCTGCCCTAAGAGACTCACCCGTCCCGGTGCTCTTTCTT
CGCGAGCCCACCTTGCCCCGCAATCAAGGTGGATCACATCCTTCAGTCTT
ATGATTTCGTAGAGACCTTTTCTCGATGATCACGACTTCGTGGCCGCGAT
CAGTTGACCATAGCCGATTCAGCATCGTATCGACATCAAC
UFO12096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE4-RA | 839 | CG17525-RA | 28..527 | 85..584 | 2275 | 98 | Plus |
| GstE10-RB | 1134 | CG17522-RB | 451..624 | 229..402 | 285 | 79 | Plus |
| GstE10-RA | 889 | CG17522-RA | 206..379 | 229..402 | 285 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18403275..18403774 | 85..584 | 2110 | 97.4 | Plus |
| 2R | 25286936 | 2R | 18397148..18397321 | 402..229 | 270 | 77 | Minus |
| 2R | 25286936 | 2R | 18404778..18404861 | 229..312 | 210 | 83.3 | Plus |
| 2R | 25286936 | 2R | 18407095..18407279 | 225..409 | 205 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:19 has no hits.
UFO12096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:26 Download gff for
UFO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE4-RA | 1..506 | 85..590 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:11 Download gff for
UFO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE4-RA | 26..533 | 82..590 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:39 Download gff for
UFO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE4-RA | 26..533 | 82..590 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:39 Download gff for
UFO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18403273..18403780 | 82..590 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:11 Download gff for
UFO12096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14290778..14291285 | 82..590 | 97 | | Plus |
