UFO12108.5prime Sequence
528 bp (463 high quality bases) assembled on 2012-07-26
> UFO12108.5prime
GGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAGTCGACATGTCGTACAAAGCGTTTGTCTT
CTTTTGTCTCTATATTGACCTTGCCAAGGGACTAATTACATCCGAAATTA
TAGCCTCGCACAACTATCCGGTAGAAGTACACACAGTGCTCACACGAGAT
GGGTATTTACTCGACGCGTTCCGGATACCGGGCTCTAAATTTTGTCAGCA
ATCTGGACCAAAGCCGGCGGTTCTCTTTCAGCACGGAATGTCCGCGTCCT
CGGACGTTTTCCTGCTAAACGGACCTCAGGATTCATTGGCATTCATGTTG
GCCGACGCCTGCTTCGATGTGTGGCTGAGTAACTCAAGGGGCACTCGGTA
TTCCCGACGCCACGTGTTCTTTGGATCCCTCTGATGAGGCCTTCTGGCGC
TTCAGCTGGCACGAGATTGGAAACGGAAGGACTGGCCGCTTTCAATAGAC
TAAATTCTGGACACCACGAAGGCAAAGG
UFO12108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1248 | CG11598-RB | 1..441 | 78..521 | 2085 | 98.7 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 65..437 | 142..517 | 1205 | 88.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12635035..12635412 | 141..521 | 1680 | 97.9 | Plus |
| 3R | 32079331 | 3R | 12633483..12633855 | 142..517 | 1115 | 88.3 | Plus |
| 3R | 32079331 | 3R | 12634912..12634979 | 73..140 | 325 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:59:58 has no hits.
UFO12108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:28 Download gff for
UFO12108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..446 | 78..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:42 Download gff for
UFO12108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..446 | 78..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:14 Download gff for
UFO12108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..446 | 78..528 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:14 Download gff for
UFO12108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12634909..12634979 | 69..140 | 95 | -> | Plus |
| 3R | 12635035..12635417 | 141..528 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:42 Download gff for
UFO12108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8460631..8460701 | 69..140 | 95 | -> | Plus |
| arm_3R | 8460757..8461139 | 141..528 | 97 | | Plus |
