UFO12110.5prime Sequence
1146 bp (1033 high quality bases) assembled on 2012-07-26
> UFO12110.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGCTGCGACCACTGTGCA
TTATTCAGATCCTTTTGCTCGCTTTCCTGGCGAACGAGTCGGAATCCTCG
AACACTCATCTCCATCGCTATATGCTGGACACCTATAAGCCGCAGCACAA
TCGAAAAACCCAAATGAACTACAAACGACGCCGTACTGTAAGGAGCGATC
ACGAAATGGCTATCGATCCCAATAATCCAAATAATCCCAATAATCCAAAT
AATTCCGATAGTCCCGATAATCCCAATAATCTCAATAATCCAAATAATCC
GAATAATGACACAGTACAGTATGGACATTCCAAGGAGCCTGTAGTTACCT
TGACCAATTCGGACAAGAAGGTGCCGCTGCACGAGCTGATGGTGAGACTC
TATCAGCAAAACAAATATATCTGCATGGGCACGGTGATATCCGAGATGCT
AGTGATTACCACTAGCACTTGTTTTAATTTGGCCAGCAGTGAAGTGGTCA
CGATGAAGATGTACGATGACGAAGTCCTCGAAGGGAAAAGAGTCGCTCTC
AACCAGACCTACCTTAAAGGAGCGGATCCCATGCTGGTTGCTATTCAACT
AACCAAGTCCCCAAAGAATTCCAAAGTGACTGGTGACACCGTGAAGCTGT
GCGATTCGGAGCTAGAAATATACGAGCCCATCGAGCTGCCACTGTGGATC
AGGAGTCGCCACAGTATTCACTCGCAGACAACGTACATCATACCGATGCA
GGCGTGCCGACTCCGCATGAGGGATCCCGAAGCGATGGTCGCCACCGACA
CTATGATCTGCGTGAAGAACATGAAGTATACGGCCCAGTGCCAGTTGGCC
ATGGGTAATCCCCTCGTTCACGACGAACGCATCTGCGGCATCATGTGCTG
GTCACACTGTCCCGCTACCGGGCGTGATCTATACATCAGGTATACGATGC
TCTCGCTTCTCGATATGGCATGAAATCATAAAACTCCCGCATAGAGATCC
ATTTGCAGCCTTTCTAGACCATCGGTGGCGCGCGGACAGGTTAAGTTGTC
ATAATCTAATCTAATTCATAATCTATCACTAGCTAGCAAGTCTCTG
UFO12110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9997-RB | 1325 | CG9997-RB | 1..988 | 82..1054 | 4575 | 98.5 | Plus |
| CG9997-RA | 1030 | CG9997-RA | 1..988 | 82..1054 | 4575 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28756118..28756979 | 943..82 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:45 has no hits.
UFO12110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:25 Download gff for
UFO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9997-RA | 1..988 | 82..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:33 Download gff for
UFO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9997-RA | 1..988 | 82..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:06 Download gff for
UFO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9997-RA | 1..988 | 82..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:06 Download gff for
UFO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28756003..28756996 | 66..1045 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:33 Download gff for
UFO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24581725..24582718 | 66..1045 | 97 | <- | Minus |
