Clone UFO12111 Report

Search the DGRC for UFO12111

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:121
Well:11
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9997-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12111.5prime Sequence

1085 bp (709 high quality bases) assembled on 2012-07-26

> UFO12111.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAATCCACATGCTGCGACCACTGTGCA
TTATTCAGATCCTTTTGCTCGCTTTCCTGGCGAACGAGTCGGAATCCTCG
AACACTCATCTCCATCGCTATATGCTGGACACCTATAAGCCGCAGCACAA
TCAAAAAACCCAAATGAACTACAAACGACGCCGTACTGTAAGGAGCGATC
ACGAAATGGCTATCGATCCCAATAATCCAAATAATCCCAATAATCCAAAT
AATTCCGATAGTCCCGATAATCCCAATAATCTCAATAATCCAAATAATCC
GAATAATGACACAGTACAGTATGGACATTCCAAGGAGCCTGTAGTTACCT
TGACCAATTCGGACAAGAAGGTGCCGCTGCACGAGCTGATGGTGAGACTC
TATCAGCAAAACAAATATATCTGCATGGGCACGGTGATATCCGAGATGCT
AGTGATTACCACTAGCACTTGTTTTAATTTGGCCAGCAGTGAAGTGGTCA
CGATGAAGATGTACGATGACGAAGTCCTCGAAGGGAAAAGAGTCGCTCTC
AACCAGACCTACCTTAAAGGAGCGGATCCCATGCTGGTTGCTATTCAACT
AACCAAGTCCCCAAAGAATTCCAAAGTGACTGGTGACACCGTGAAGCTGT
GCGATTCGGAGCTAGAAATATACGAGCCCATCGAGCTGCCACTGTGGATC
ATGAGTCGCCACAGTATTCACTCGCAGACAACGTACATCATACCGATGCA
AGCGTGCCGACTCCGCATGAGGGATCCCGAATCGATGGTCGCCACCGACA
CTATGATCTGCGTGAAGATCATGAAGTATACGGCCCAGTGCCACTTGGCC
ATGGGTAATCCCCTCGTTCACGACGAACGTCATCTGCAGCATCATGTGGC
TGGTCACACTGTCCCGCCTACACGGTCGTGATCTATACATCAAATATACG
ATGCTCTCGCTGCTCGATATGGGGCATGTAATCATAAAACTCCGCATAGA
ACATGCATTTGCCAGCTTTCTGATCGATTCGGTGC

UFO12111.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-RB 1325 CG9997-RB 1..978 82..1051 4445 97.5 Plus
CG9997-RA 1030 CG9997-RA 1..978 82..1051 4445 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28756048..28756979 1010..82 4265 98.4 Minus
Blast to na_te.dros performed on 2014-11-28 17:59:48 has no hits.

UFO12111.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:25 Download gff for UFO12111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..954 82..1031 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:35 Download gff for UFO12111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..954 82..1031 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:08 Download gff for UFO12111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..954 82..1031 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:08 Download gff for UFO12111.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28756026..28756996 66..1031 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:35 Download gff for UFO12111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24581748..24582718 66..1031 97 <- Minus