UFO12113.5prime Sequence
1165 bp (1058 high quality bases) assembled on 2012-07-26
> UFO12113.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGAAGTTGATCCGGGGCAC
AACTCTTTTGGGCATCGGCATATTATTCGTCGGGTGCGGGGCGTTCAGCC
TGCCCTCCGTTTACGATGTCCTGTCTAAGGATCAGCAGGCCACATCCTTT
GTATCAGCCAGCATAGCGGAAGAGATAAGCCGTGAGTACCTGAAGTACCA
CCGAACTGGCATCGAGACGGAGAGGCTTCGCCAGCTGGGAAAGGACATCC
GGAGTAGTCACAGCAAGAAGGCCATTTTCACGGAATCCATGGCCGATCTC
ACCTCAACGGACCAGTTCTTCGTCTGCACCCTGTGCAGATCTACCATCAA
CGTGTTTGCTCGAACTTTCACCGAGGGCGAGCTGAGTGGTCCGGAAAGGG
ATGATGAGGCGAAGAAATTGATGCTGGGCATGTGTGACTACTTTGCTATC
AGCACCCAGGAGGTGTGCTCCGGATTATTCGATCTCAACTGGCCGATTCT
GGACTTTATTCTGAACGAAACTGTGGCAAAGTCGAACACCTTTTGCAGCA
TGCTGCCCATCCCAATTTGTCAGGTGAAACAGGATGAGTACAATCTCACC
TTGTCCATCCAGGGAGACTTGCCCCAGGAATCGAACTCCAACTTGCCCGC
CAAGACCTCCGAGGATATTCTTGTCCTGCACCTGACCGACATCCACTACG
ATCCTGAATACGCCGAGGGCAGCAATGCAGCTTGCGATGAGCCCATGTGC
TGCAGAAATTCCCTGCCCGAAGGATCTGACTCGTCGGCAGCTGCTGGCTT
TTGGTCTGATTACCGTGATTGTGACTGCCCCAAACGCCTCATCCTTAGTG
CTTTCGAGCACATCAAGGAAAACCACAAGATCGAGTGGATATACCATACT
GGAGATGTGCCGCCCACAACGTGTGTCACACAGACAGGCACCTGGATATG
TGTCCGAATCGACGACTGCTGCAGTATTCCCGACACGCCATCTACCCATG
TCTGAACACGAGCCACATCAGCAAATGTTTCGAACCGACAGATCCAGCTC
TTAAGTGACTGATGGATGACCGTGATGGGTCGCAATGGTGCGCAAGGCGA
GAACTGTTCCTCCGA
UFO12113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15534-RA | 2164 | CG15534-RA | 1..1021 | 81..1080 | 4610 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30432408..30433179 | 205..975 | 3810 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30432059..30432190 | 76..207 | 645 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:10 has no hits.
UFO12113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:31 Download gff for
UFO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1037 | 81..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:51 Download gff for
UFO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1037 | 81..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:21 Download gff for
UFO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1037 | 81..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:21 Download gff for
UFO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30432057..30432190 | 72..207 | 97 | -> | Plus |
| 3R | 30432411..30433306 | 208..1083 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:51 Download gff for
UFO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26257779..26257912 | 72..207 | 97 | -> | Plus |
| arm_3R | 26258133..26259028 | 208..1083 | 97 | | Plus |
