UFO12114.5prime Sequence
1142 bp (1014 high quality bases) assembled on 2012-07-26
> UFO12114.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGGAACCTATACTGATAGAA
AAATCTCAGTGGCCAGAGCTCAGAGATTTGTACGCGAATGATAGAACTAA
TCTCACGGGATTCGACTTAATCGAGTACTTTTTAAATTACATACCCTTAT
CCACAACCGAATCCATAAAGATATATACAACTGATACGGATTGGAGAACA
CATGGCAGTTATATACTAATTCATTATTTGGAGAACAAGGCCTATATTTA
TATGAATACCATTAAGGGAACCCCAGAAGATCTTGGCAAATTGTTGAACT
CTCTAAAACTTAAAGTGTTTCATTTAATCTGTGGCTATGAAGAACGATTC
AAACCATTAGTTGAGGCATATTGGCTGAATTTGGGTCAAGATTTGATTAA
TCTTGAACACCAGGGCGCTATTGTTTACCACCTGCCAAGCACCGAAATTC
CCAGTTGGAAACCAAGTTTGAGTACCTCTTGCAAAGTGGCTTATATCACA
TCAAATCATGCCGAATTGGTCGACAAACATTGGGCTTATCGTTCAGCTGA
TTCTATAACTATGATAAGGGGTTTTATGGAGAACAATCTCGCTGTTGGTG
TTTTTGATAACCAAGGAGAACCCCTAGCGTGGTGTCTAAGATCTCCTCAT
GGTAGTTTGAGTAACCTACACGTTTTATCCTCACATCGTCGAATGGGATT
GGGTTCTTTGGCAGTGCGCTTTATGGCTAATGAAATCAAGTTAAAGGGCT
CAGAAGTTCTGGCCACAGTTGTTCCCGAAAACGAGGGTTCGCAAAAATGT
TCGAGAAACTATGATTCAACAATATCAACAAACTCTACTGGGCAGTGATA
CCGTGCACTTTAGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAGTGGTCATAATCATAATCATATCATAATCATATCACACTAGCTAGGA
GATCTGTCATGACTAGTGCTGATCCCACATAAAAACGCCGGCGGCACCGG
CGTTCTGACAATCGGATGGGTTCTGAGGTCATTACTGATCTATCACAGGA
TTCAAGCGAGACTCGGATCAATACGCTCCGCCTGCCAGCGTA
UFO12114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 876 | CG34010-RA | 18..851 | 80..912 | 4130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8010135..8010379 | 516..272 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 8009628..8009852 | 912..689 | 1060 | 99.1 | Minus |
| 2L | 23513712 | 2L | 8010444..8010635 | 271..80 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 8009905..8010080 | 690..515 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:00:13 has no hits.
UFO12114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:32 Download gff for
UFO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 1..834 | 80..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:53 Download gff for
UFO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 6..851 | 68..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:23 Download gff for
UFO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 6..851 | 68..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:23 Download gff for
UFO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8009628..8009850 | 691..912 | 99 | <- | Minus |
| 2L | 8009905..8010078 | 517..690 | 100 | <- | Minus |
| 2L | 8010135..8010379 | 272..516 | 100 | <- | Minus |
| 2L | 8010444..8010649 | 64..271 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:53 Download gff for
UFO12114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8009628..8009850 | 691..912 | 99 | <- | Minus |
| arm_2L | 8009905..8010078 | 517..690 | 100 | <- | Minus |
| arm_2L | 8010135..8010379 | 272..516 | 100 | <- | Minus |
| arm_2L | 8010444..8010649 | 64..271 | 96 | -> | Minus |
