UFO12116.5prime Sequence
1118 bp (1004 high quality bases) assembled on 2012-07-26
> UFO12116.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGGAACAGGCGTACAGTACA
GCTTCCCGACTGCGTGGGATTTGCGTTTGTGGATTGGCCATTTCGGTGTA
TTCACTGTATGTGAAAATGAAACTAAAGGAGGATGAGAACTATAGGCCAA
TGTGCGACGTTAACGATAATATAAGCTGCTCGCTGGTTTTTAAATCGGGC
TATGGTGATGGCTTTGGTCTGGGTAACATAACCCAAGTAAATGCTCCCAA
CGGAGCCATCGGCTGTGCATTTTATATCCTGTACTTCTTGAGCTCTTTCT
TTAATCATCGTTGGCTGTGCCTGGTCCAATTGATAGTATGCACTTTGACA
TTACTTCTCTGCGTTTATCTGGGTTTCCTGCTGATTCTCGTGTTTTACGA
TTTCTGTTTGGTATGCGTGACCATCTATTTCATACACACATGGCTCTTTC
AGGAAGTCCTAAGGCGATATAGACGCCTTTATATGGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCCATATTGCACGTTTA
AATCAAACTGTGAACTCACCCAGGATTGCTGAACGATACTATCTCATAAC
CCTTTAGAAGTAGCAGTTCACCGTACACGCCAATCTTGCAATATATGTGT
AGACTGCGATCGTCTGTATCCTCGAGCGATGAACGTTCAGTTGCTCATGG
AACGGTTACAGGTGAACC
UFO12116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vkor-RA | 520 | CG33544-RA | 1..456 | 80..535 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16778740..16778930 | 345..535 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 16778365..16778534 | 80..249 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 16778589..16778684 | 249..344 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:15 has no hits.
UFO12116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:33 Download gff for
UFO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 80..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:54 Download gff for
UFO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 80..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:25 Download gff for
UFO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vkor-RA | 1..467 | 80..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:25 Download gff for
UFO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16778358..16778534 | 72..249 | 97 | -> | Plus |
| 2R | 16778590..16778684 | 250..344 | 100 | -> | Plus |
| 2R | 16778740..16778930 | 345..535 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:54 Download gff for
UFO12116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12665863..12666039 | 72..249 | 97 | -> | Plus |
| arm_2R | 12666095..12666189 | 250..344 | 100 | -> | Plus |
| arm_2R | 12666245..12666435 | 345..535 | 100 | == | Plus |
