UFO12118.5prime Sequence
932 bp (866 high quality bases) assembled on 2012-07-26
> UFO12118.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGTCGTTAGCTGTATTGACTT
TTCTAGTACTCTGTGGATTTTCCTTTCAGCATCAGGCAGTTGCTGACTGC
GGCGCAGAAACATCCGATCTCTGGAAGGATGATACGGATTCGGACGAAGG
AACTTGCACTCAAGCCTCGATAAATAATGATAGGAAGGAAGATCCATTTG
AAAATGATCCAATTATAAGGCAATCGAAAAAGAAAGTGGAAAACAATGAC
AGCATGAATTCAGAAGTTCAGTTGCCACTATTTCAGAATATAATAAAGAT
ATTCAAGTTTATATGGCTGGTGCTGAGTGTTTGGATGAATTGGAAGGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGATGCT
GAAACGAAAAAACATATCCTCATAACCCATAGCATAGCAGTTCCACCGTA
CCGCCCATCTGCAATTATTGTGAAACTGCGAT
UFO12118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BG642167-RA | 384 | CG34103-RA | 22..340 | 78..396 | 1595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25806663..25806917 | 142..396 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 25806466..25806530 | 78..142 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:21 has no hits.
UFO12118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:34 Download gff for
UFO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642167-RA | 1..321 | 79..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:59 Download gff for
UFO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642167-RA | 1..321 | 79..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:28 Download gff for
UFO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642167-RA | 17..343 | 69..400 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:28 Download gff for
UFO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25806466..25806530 | 78..142 | 100 | -> | Plus |
| 3R | 25806664..25806917 | 143..396 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:59 Download gff for
UFO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21632188..21632252 | 78..142 | 100 | -> | Plus |
| arm_3R | 21632386..21632639 | 143..396 | 100 | == | Plus |
