UFO12119.5prime Sequence
614 bp (549 high quality bases) assembled on 2012-07-26
> UFO12119.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGAGCCAATACGACAATCCGT
TTAAGATTATCATCCTGGGTGACAGCGGCGTAGGCAAAACCTGCCTGCTG
ATGCGTTTCTCGGATAACCAATTCACCACAAGACACCGGAGCACTGTGGG
CTTGGATAGAAGGGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGA
GGATGCTGCAAGTCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTG
AAGGCGACCCAATGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACAT
AACGTCGTCCAAAAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATAC
GGCGCCTGTGTCCGGATAAGGTAACCGTCCTGCTGGTGGGCAACAAAAGT
GATGATCCGAACCATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGC
CCATCGTCAGTCAATCTGCTTTGAAGAGGTTCCGCCAAAAGTGGAAGGAA
TGTTTATGACATATTTTGCTTCTTGGGAATGGAACTATAAACATTACGTC
CGGGAACTTGGCAC
UFO12119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9Fa-RA | 871 | CG32671-RA | 68..584 | 79..594 | 2440 | 98.3 | Plus |
| Rab9D-RA | 897 | CG32678-RA | 94..610 | 79..594 | 2380 | 97.5 | Plus |
| Rab9E-RA | 889 | CG32673-RA | 86..602 | 79..594 | 2365 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10950447..10950963 | 594..79 | 2415 | 98.3 | Minus |
| X | 23542271 | X | 10589182..10589698 | 79..594 | 2355 | 97.5 | Plus |
| X | 23542271 | X | 10661242..10661758 | 594..79 | 2340 | 97.3 | Minus |
| X | 23542271 | X | 10622642..10623158 | 594..79 | 2310 | 96.9 | Minus |
| X | 23542271 | X | 10417496..10417995 | 79..583 | 1410 | 86.2 | Plus |
| X | 23542271 | X | 10951938..10952419 | 565..79 | 1005 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:00:24 has no hits.
UFO12119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:35 Download gff for
UFO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..573 | 79..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:01 Download gff for
UFO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..573 | 79..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:30 Download gff for
UFO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fa-RA | 68..573 | 79..583 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:30 Download gff for
UFO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10950458..10950973 | 62..583 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:01 Download gff for
UFO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10844491..10845006 | 62..583 | 97 | -> | Minus |
