Clone UFO12121 Report

Search the DGRC for UFO12121

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:121
Well:21
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptlox-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12121.5prime Sequence

613 bp (507 high quality bases) assembled on 2012-07-26

> UFO12121.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGGCTTCGTTCCGGTTTCAAT
TGTTGCAGCTCCTAGTGGTTCTCAGCCAAGGTTGGGCCAACCTCAACGTG
CAGAACAACTATAGAAACATGATGGTCCGACTGGCCACTAACAAGGCAGC
GCTCGCCGGTATTCAAGTCCTCCGCGAGGGACGCGTGGAGGTGAGCTTTG
ACTTTGGCGCCTCATGGGGTACGATCTGCAGCACTTCGTGGAGCATGCGG
GAGGCAAATGTGGTGTGCCGACAGCTAGGATTGGGCTACGCTTCCAAGGC
AAGCCAGGGAACGGAGCACGGGGATAGCCGGAAGTATCCCTGGGGCATGG
TGGGCACTCTGTGCAGGGGAACCGAGCGTCGCCTAGCCGACTGCATCCGG
GAGTCCCACTACCCGAACCTCTGCAATGCCAAGAAACCATAATGTCAGCA
TTGCGGCCTGTGTTAGCCATTCGGCTGACCTGGAGATCGGACTGGTGGAC
ATCGAGAGAACCGCCCCGCCTGGAGGCCGTGGCCCATGTCGCCGCTCACA
TGCGCCATGAAGA

UFO12121.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
lox-RA 1435 CG11335-RA 149..676 79..609 2565 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31459194..31459721 609..79 2490 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 18:00:31 has no hits.

UFO12121.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:36 Download gff for UFO12121.5prime
Subject Subject Range Query Range Percent Splice Strand
lox-RA 147..680 75..612 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:06 Download gff for UFO12121.5prime
Subject Subject Range Query Range Percent Splice Strand
lox-RA 147..680 75..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:34 Download gff for UFO12121.5prime
Subject Subject Range Query Range Percent Splice Strand
lox-RA 147..680 75..612 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:34 Download gff for UFO12121.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31459190..31459721 79..612 99 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:06 Download gff for UFO12121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27284912..27285443 79..612 99 == Minus