UFO12122.5prime Sequence
1046 bp (1032 high quality bases) assembled on 2012-07-26
> UFO12122.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGAGCAGTTCGATATTTCGG
GCCTTTTGGCTACTTTGTTCACTGCTGATCTGTGTCACGAATGCCGCTGA
TTATCGACTGGAAGGTAGCGTCGTACCATCGCACTACAACCTGACCATCG
GTGTTTTGCGGAACTCAGTCGAGCCCACTATTTTCGATGGCGAAGTGAGC
ATTACCTTGCGGGTGGTCGGAACTTTGGAGGTGCAACAAATCATTCTACA
CGCTGATACGCTCGACATTACGGAATGTTGGCTTTTGGATGCGGCAGGTG
CGCAGGTGGAGGCCATCGATATCAGCAGGTTGATTTATGAGGCCGCCACC
CAACAGGTGAGAGTTCCGCTGACGGAGGCCGCGCAGCCAGGCAAAAATTA
TACGCTCGGGTTCAAGTACACCGGGCACATACGAACGGATATGGCCGGCT
TCTTCTCCGCCAGCTATGTGGAGAGGGATACCAATGTGACCAGGTGGTTG
GCTCTCACCCAGATGCAGCGCATCAACGCCCGTTTGGTCCTGCCCTGCTT
CGATGAGCCCGCCCTGAAGGCACAGTTCCAACTGCAGATTGTTCGGCCCA
ACGGGTATCAGTCGATTGCCAACACCAAGCTAAAAGAAACTAAAGCTTTA
AGCCAAGATCGTTTTGTCGATCACTTCAAGGAGACCCCTGTAATGTCCAC
ATATCTGCTGGCCTTCATGGTGGCCAATTATTCTGCACGTGGAAATGAGA
GTGAGTTCGCAGTGCTCACTCGTCCGGAGTTTTATGATAACACAGAGTTC
AGCTACCATGTGGGTCAGCAGGTGGTTTCAGCATACGGGAGTGTTCCAGA
GTCCATATGCTGACTGGGCAACGATGTGCTGCAGTATGCCAGTTCGCCCA
GGTTCCCGCACACGGCATGGAAAACTGGGGCTCATATCTACACGACGATG
TCCCTATACAGGAACTGGATACTCGGATGATAGTCGGATAAGGAGT
UFO12122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42335-RE | 2786 | CG42335-RE | 5..986 | 74..1046 | 4640 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21758768..21759396 | 74..702 | 3130 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21759458..21759746 | 697..981 | 1235 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:03 has no hits.
UFO12122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:29 Download gff for
UFO12122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RD | 1..976 | 80..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:47 Download gff for
UFO12122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RC | 2..986 | 71..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:17 Download gff for
UFO12122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RE | 2..986 | 71..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:17 Download gff for
UFO12122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21759464..21759760 | 703..992 | 97 | -> | Plus |
| 3R | 21759849..21759904 | 993..1046 | 92 | | Plus |
| 3R | 21758757..21759396 | 60..702 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:47 Download gff for
UFO12122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17585186..17585482 | 703..992 | 97 | -> | Plus |
| arm_3R | 17585571..17585626 | 993..1046 | 92 | | Plus |
| arm_3R | 17584479..17585118 | 60..702 | 99 | -> | Plus |
