UFO12123.5prime Sequence
1132 bp (1004 high quality bases) assembled on 2012-07-26
> UFO12123.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGCGAGTCTTGGGGGCCA
ACACGGAAATATTTCGACTAATCCAGAAGTGGAAAACACAGCCAAGCGAC
CCGAAAGTCGCGAGGGCAGCGCCGAGCGAAAAGCGTCCAAAGACCGTGAG
GAGAAACTAAAATATGCCCGCGATCGCCAAAATGAGGAGCGCCACCGGAA
AATCGAGGAACTGCGTGCCCAGGCGGAGGCCGCCCAGCGGTACCGTGAAC
AAAAGGAGGAGGAGCGCCGTCGACGCATCGAGGAGATCCGTACCCGGGAC
ACAGAGAAGCGCCACCAGGTGGAGGAGCGCAAGAAGGCCATTTTCGAGGC
CGAGAAGGAGCGCCGCGAGTACATCCTCAAAAAGAATCAGGAACGCGAGT
CCCGGATAGAAGTGAAAAAACGGGACAGAAACTCCATCGGCTTCGCATTT
GGCTCCTCGACTCCCCGCCTGCTGGATGTGCCCGCGGATTATGGTCTGGT
ATCGCCCAGTGCCTTTTGGGGTCAGCGGAGGTCCACATCTATATCGAACG
TAGCGGGCGCCTCGCTCACACGTCGAAGTTCAGAGCGTGAACTTGCCGAC
AGTGGTGCTAAGAAGCGTGCCTCCTCATCGACGGACCGACAAGATGGCTC
GCGATCGGGAAATGCCACGCCCGGCGGACACTTCAATAACTCAAGGCCCG
GCAGCGCCATGTCCACATCGACAAACATGTCCACATCCGGGCTGGTGCCC
AGGCGACCGGCAACGGCACCCCGGAAACCGAGGCCCGCCAGTATCGCCGG
AACGGGCATGTCTCTCGAGGAGATTAACAAACTCAAGAGGGATCAGAAGC
CGCCCGTGAGACGACAGCGCTCGTCATCGCACAACGACACCCAAACGACT
GCAACCTTATGTCCACTCCCTGATCGTGACTCAGCTCATCGCGCTGACAC
GCCGAAGGAGACGCCTTCGAAGCGGAACCTCGTACCCAAGCAGCATCAGC
TTCAAGGCGCTGCAGTCGCAAGGCCAGTTCGAGCGCCATCAGTAGCCTAC
AGATCGAACCAAGATACCCTCGCCATTACTAG
UFO12123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RB | 3887 | CG14998-RB | 49..1085 | 81..1095 | 4560 | 97.3 | Plus |
| ens-RH | 3878 | CG14998-RH | 49..1076 | 81..1095 | 4415 | 96.4 | Plus |
| ens-RC | 3833 | CG14998-RC | 95..1031 | 181..1095 | 4060 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4131955..4132214 | 441..182 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 4126989..4127163 | 870..696 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 4131748..4131892 | 582..438 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4131120..4131238 | 697..579 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 4133769..4133824 | 183..128 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 4134454..4134502 | 129..81 | 245 | 100 | Minus |
| 3L | 28110227 | 3L | 4126893..4126932 | 909..870 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:00:07 has no hits.
UFO12123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:30 Download gff for
UFO12123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RA | 41..152 | 74..184 | 96 | <- | Plus |
| ens-RA | 261..1178 | 185..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:49 Download gff for
UFO12123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 41..1070 | 74..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:19 Download gff for
UFO12123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 41..1070 | 74..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:19 Download gff for
UFO12123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4126989..4127162 | 697..870 | 100 | <- | Minus |
| 3L | 4131121..4131236 | 581..696 | 100 | <- | Minus |
| 3L | 4131750..4131889 | 441..580 | 100 | <- | Minus |
| 3L | 4131956..4132212 | 184..440 | 100 | <- | Minus |
| 3L | 4133769..4133822 | 130..183 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:49 Download gff for
UFO12123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4126989..4127162 | 697..870 | 100 | <- | Minus |
| arm_3L | 4131121..4131236 | 581..696 | 100 | <- | Minus |
| arm_3L | 4131750..4131889 | 441..580 | 100 | <- | Minus |
| arm_3L | 4131956..4132212 | 184..440 | 100 | <- | Minus |
| arm_3L | 4133769..4133822 | 130..183 | 100 | <- | Minus |
