UFO12125.5prime Sequence
1130 bp (1041 high quality bases) assembled on 2012-07-26
> UFO12125.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGTTCATTCCAAAAGCCAATC
GTGTCGCCATCTACGAGTACCTCTTCAAGGAGGGTGTGCTCGTGGCCAAG
AAGGACTCGCCCATCCAGAAGCACTCCGAACTGGATAAGATTCCCAATCT
GCAAGTCATCAAGGTGATGCAGTCGCTGAACTCACGTGGCTGGGTCAAGG
AGCAGTTTGCCTGGCGCCACTTCTACTGGTTGCTGACCAACGAGGGCATC
GAGGAACTGCGCCGCTATCTGCACTTGCCCCCGGAGATTGTGCCCTCCAC
TTTGACGCAAACTACTCGATCGAACGCAGTGCGTCCGCGCGGAGGACCAG
GAGGACCCGGAGGAGGATTCGGAGGCGCCTCCAAAACCGATGACGACAGA
TCGAACTACAGACGCGGTCCAGGCGCATATGGAATGGACAAGAAAGGCGA
TGTGGGTGCCGGAACCGGACGGGTCGAATATCGTGGCGGTTTCGGTCGTG
CTTCTCGCTACGACAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGTGA
AAACGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATCAACTGTGAAC
TCACCAGGATGCTGAAACGAAAACATATCTCATAACCCTTTAAGATAGCA
GTTCACGTACCGCCCATCTGCAATATGTGTAGACTGCGAATCGTCTGGCA
TTCATTCGAGCGATGAACGTTCAGTGCCTG
UFO12125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10a-RA | 604 | CG12275-RA | 77..565 | 79..567 | 2445 | 100 | Plus |
| RpS10b-RD | 809 | CG14206-RD | 168..436 | 79..347 | 645 | 83.5 | Plus |
| RpS10b-RC | 1469 | CG14206-RC | 97..365 | 79..347 | 645 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27652836..27653324 | 79..567 | 2445 | 100 | Plus |
| X | 23542271 | X | 19598434..19598702 | 79..347 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:38 has no hits.
UFO12125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:38 Download gff for
UFO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 1..492 | 79..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:11 Download gff for
UFO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 72..568 | 74..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:37 Download gff for
UFO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 72..568 | 74..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:37 Download gff for
UFO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27652831..27653333 | 74..575 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:11 Download gff for
UFO12125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23478553..23479055 | 74..575 | 98 | -> | Plus |
