UFO12128.5prime Sequence
473 bp (424 high quality bases) assembled on 2012-07-26
> UFO12128.5prime
GGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAGTCGACATGAGACGCGCCGGTTTAATCAA
ACCGCTGTTGCGTATAAATAACGAAAAACAACGTGTTTGGAGAAAAAACT
ACGCTACCCAAGTGGTTTCCGGCTTGGAGGAGTGCTCACTAGACCCCAAG
GAGTATGTGGACTTCAAGCGGCAGCTGCGGCAGCTCAACTTGCCCCACAA
AGACGGACACACGTGCTTGCAGCTGGAGTGTCGCCTCTGCGATCGCAATA
GGCAGCCGGTGACAAACGCCCAAAAGGGCACCGATCATGGGCTGCTGGCT
TACGTAAACAAGCGGACGGGAGCCTTTATCTGCCCCAATTGCGACGTAAA
ACCCTCACTGACCAGCGCTTTATTATTCTATCAGTTGCCCAACCGGGTGG
CTTTAGAACCGGTGGCAAGGCAG
UFO12128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtDNA-helicase-RA | 1965 | CG5924-RA | 28..403 | 78..452 | 1810 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9893127..9893419 | 370..78 | 1465 | 100 | Minus |
| 2L | 23513712 | 2L | 9892997..9893070 | 442..369 | 340 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:00:44 has no hits.
UFO12128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:39 Download gff for
UFO12128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5924-RA | 1..387 | 78..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:15 Download gff for
UFO12128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtDNA-helicase-RA | 20..414 | 70..461 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:42 Download gff for
UFO12128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtDNA-helicase-RA | 20..414 | 70..461 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:42 Download gff for
UFO12128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9892975..9893069 | 370..461 | 92 | <- | Minus |
| 2L | 9893128..9893427 | 70..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:15 Download gff for
UFO12128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9892975..9893069 | 370..461 | 92 | <- | Minus |
| arm_2L | 9893128..9893427 | 70..369 | 98 | | Minus |
