UFO12130.5prime Sequence
843 bp (760 high quality bases) assembled on 2012-07-26
> UFO12130.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGGAGCTTTTGTCGCTGCTA
ACACTTCTGCTATTAGCCATTGCCTCGAATGAGGCATGTCAAGTGCAGAG
CTCGTCCAGTGAAACGACCAAGGACTGGTGGCAAACCGCCCAGTTCTATC
AGATCTACCCGCGCTCCTTCAAAGACTCCGATGGCGATGGCATTGGTGAT
TTGAACGGCATAACCAGCAAACTGGAGTATCTCAAGGACTTGGGCGTAAC
GGCTGCTTGGCTATCGCCTATCTTCAAGTCGCCCATGGTCGACTTTGGCT
ATGACATATCCGATTTTTTTGACATTCAACCGGAGTACGGAACACTCGAG
GATTTTCGTACATTGATCAAGCGAGCCAAGGAGCTGGATCTAAAGATCGT
CCTGGACTTCGTACCCAACCATTCAAGCAACGAGAGTGAGTGGTTCCTGA
AGTCGGTTAAAAGAGAGAAGGGCTACGAGGACTACTACGTGTGGCACGAC
GGGAAGGTAAATTCCACCACTGGGAAGAGGGAGCCTCCGACCAACTGGCT
ACAATACTTCCGTGGAAGTGCCTGGGAGTGGAACGAGGTGCGTCAGCAGT
ACTACCTACACCAGTTCGCAGTGCAACAGCCAGATCTGAACTATCGCATC
CTCTGGTGTGAGCAGATGAAGCGGGTGCTGCGCTACTGCTGACGAGGCGT
CCCTGGATCCGGTGGATGCACTGCCTCCGCTTTTGAGTCTGCCGATAGCG
ACGTCATTCGATGAGTTGCATGCCACGAGACAAAGGATCCGAC
UFO12130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A8-RA | 1814 | CG8690-RA | 30..765 | 80..803 | 3365 | 98.2 | Plus |
| Mal-A7-RB | 2717 | CG11669-RB | 120..691 | 170..738 | 1210 | 81.1 | Plus |
| Mal-A7-RA | 1925 | CG11669-RA | 120..691 | 170..738 | 1210 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8471983..8472644 | 80..738 | 3165 | 99.2 | Plus |
| 2R | 25286936 | 2R | 8470973..8471544 | 738..170 | 1140 | 80.8 | Minus |
| 2R | 25286936 | 2R | 8465296..8465807 | 176..687 | 670 | 75.4 | Plus |
| 2R | 25286936 | 2R | 8451299..8451801 | 698..196 | 475 | 73 | Minus |
| 2R | 25286936 | 2R | 8458892..8459083 | 175..366 | 240 | 75 | Plus |
| 2R | 25286936 | 2R | 8453751..8454100 | 200..549 | 235 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:50 has no hits.
UFO12130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:40 Download gff for
UFO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8690-RA | 1..740 | 80..806 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:19 Download gff for
UFO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 24..769 | 72..806 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:46 Download gff for
UFO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A8-RA | 24..769 | 72..806 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:46 Download gff for
UFO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8471977..8472722 | 72..806 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:19 Download gff for
UFO12130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4359482..4360227 | 72..806 | 97 | | Plus |
