UFO12133.5prime Sequence
1147 bp (1082 high quality bases) assembled on 2012-07-26
> UFO12133.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGCTGAACATCGTGTGTAG
AGTCTGCGGAAGGCAGAAAATCTGTGAGAAGAGCCTGAATCTCTTCGATT
TGGTCAACCGAAAATATCTAAAGCACTTGCACATGATAAGCGGACTAAGA
TTGGTGGATTTGGACGATGTTCCTGGTTTCATGTGCCTTTGCTGTCAGGC
GGAACTCAGATCGGCATTGGCATTCCGGAAGCTTTGCATTAAGACCCAAA
CTAAATGGCTAACCATCGAGGACGACTCTTCGTCGGGTGATGAAGATACC
AATGACAATTCGGAACTGGAATCGGAAAAATGCGCATTCAGCGATTTTGG
GAAAAAGAAAGAAGGCGAGTTGGTTGAAGAAACTTTTCAGGTACTGATTG
AAGAGGAGCCCATGGACAAAACTCTGAATAGAGATGCGAAAGCGCAGCTG
AGGGAAGATGGAATAGATGAGAAGTGTGTACCTTCACAAAAGATTATCAA
AGTATCAACCAAACTGGATGATCAGATTTACATATGCGAGCTGTGCGGGA
CTCATGCCACATCGAAACCCACTTTCCAGCGCCACATGAGAAAACACAGA
GGCGAACGACCATTTGGCTGCAAGGATTGTGATGCCAGGTTTCTCTCTGC
TGGCGAACTACGTGCCCACCACCGGGTACATACTGGGGGAGCAACCGTTT
GCCTGTCGCTTCTGCGAAAAGCGGTATGTCAGCTACATGGGCCGGCTGAT
CCACGAGCGGACTCACACCAACGATCGACCCTATGTGTGCGAAGAGTGTG
GCAAGAAGTTCACCACTGCCTACGTCCTAAAGAACCACATGGTCATCCAC
ACGGGCGAGAGGAATTTCCGATGCGATATTTGCGATCGCTCCTTCCAGGA
GAATGCGCACCTGGTAACGCACACCAGATCCATGATGCACTCAAAATGTC
AGAGCAGAAGTCAGCAGCTTTCTAGACAATTCGTTTGGCGCGCCGGGCCC
AGGTTAGTGGTCATATCATATCATATTCATAATCATAATCCCACTAGCTT
AGGAATCTGGTCATGACTTTGCTTGGAATTCTTCACAATAAAACGCC
UFO12133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11762-RA | 1141 | CG11762-RA | 1..941 | 76..1013 | 4510 | 99 | Plus |
| CG8159-RB | 1328 | CG8159-RB | 870..977 | 802..909 | 245 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8725652..8726125 | 201..674 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 8726188..8726503 | 674..990 | 1475 | 98.4 | Plus |
| 3R | 32079331 | 3R | 8725479..8725603 | 76..200 | 610 | 99.2 | Plus |
| 3R | 32079331 | 3R | 8727853..8727960 | 802..909 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:00:58 has no hits.
UFO12133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:43 Download gff for
UFO12133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 1..941 | 76..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:25 Download gff for
UFO12133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 1..941 | 76..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:51 Download gff for
UFO12133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11762-RA | 1..941 | 76..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:51 Download gff for
UFO12133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8725472..8725603 | 69..200 | 96 | -> | Plus |
| 3R | 8725652..8726124 | 201..673 | 100 | -> | Plus |
| 3R | 8726188..8726530 | 674..1013 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:25 Download gff for
UFO12133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4551194..4551325 | 69..200 | 96 | -> | Plus |
| arm_3R | 4551374..4551846 | 201..673 | 100 | -> | Plus |
| arm_3R | 4551910..4552252 | 674..1013 | 97 | == | Plus |
