UFO12135.5prime Sequence
1144 bp (1036 high quality bases) assembled on 2012-07-26
> UFO12135.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGATTCGAAAGTATTTAGT
TCTTATCTTAGTCCTGGGTTTCCTTCATCTCACCTGGAGTTCATCGGGGT
CGTGCAAGGATGGTTTGGTTTTTAACCCCAAAAAGCGGGTATGTGAACCG
AAGCCAACGACAGAACCTCCAGATACTTGCCGACCCGGAACGTACTGGAT
TCTAGAGAAGAAATCGTGTATCAAGTTGCGGCAAGTAATGTCTGGATATT
TTCCTGCAAAACCTGAAAAGCCCATCCAAGACCTGAAGTGCCCCAAAGGA
TTAATTTCTTTGGGAAATTTGTGTGTAAGGGAGTTAAAAATTAAAAAAAA
ATCTCAAGGGAGCGGTAAAAACGGAATAGAGGTGGATATGGACGATAAAT
ATAAAATTGTCATAAAAGAAAAACAGACTGACCCTCCTCTTGATGCAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTTCTCAATAAACCCTTTAGGGAAATAGCCAG
GTTTCCACCGTAACACGCCACATCTGCGAATATATGGTGTAGAACTGCCG
GAATCGTCTGTATTCCTCCAGACGATGAAACGTTTCAGTGCTCATGAAAC
GGGTACAGGGTGACCATCATTCACCAGCTCACGCTCATGCTATC
UFO12135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp51E-RA | 538 | CG42476-RA | 8..424 | 81..497 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15192742..15193004 | 497..235 | 1315 | 100 | Minus |
| 2R | 25286936 | 2R | 15193068..15193221 | 234..81 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:00:35 has no hits.
UFO12135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:37 Download gff for
UFO12135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp51E-RA | 1..432 | 74..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:08 Download gff for
UFO12135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp51E-RA | 1..432 | 74..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:35 Download gff for
UFO12135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp51E-RA | 1..432 | 74..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:35 Download gff for
UFO12135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15192742..15193004 | 235..497 | 100 | <- | Minus |
| 2R | 15193068..15193221 | 81..234 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:08 Download gff for
UFO12135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11080247..11080509 | 235..497 | 100 | <- | Minus |
| arm_2R | 11080573..11080726 | 81..234 | 100 | == | Minus |
